View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2916_low_6 (Length: 435)
Name: NF2916_low_6
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 154 - 418
Target Start/End: Complemental strand, 50525572 - 50525308
Alignment:
| Q |
154 |
ctgttactatgtcaatactacgatgagctaccgtgattttacaaaagctagatactctaactttctcaaatcttgctaaaaataaacttttacaaaatga |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50525572 |
ctgttactatgtcaatactacgatgagctaccgtgattttacaaaagctagatactctaactttctcaaatcttgctaaaaataaacttttacaaaatga |
50525473 |
T |
|
| Q |
254 |
tgatggtttaacataaatgctcccaaaccctatatgacaccaaatatgcatttaatccaatttactaattcaacttgctttattaattgacattatttta |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50525472 |
cgatggtttaacataaatgctcccaaaccctatctgacaccaaatgtgcatttaatccaatttactaattcaacttgctttattaattgacattatttta |
50525373 |
T |
|
| Q |
354 |
gaggttgggtaactcaacaagtttgagtttaagcgataaaaaagttggagatcctcgtttaaatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
50525372 |
gaggttgggtaactcaacaagtttgagtttaagcgataaaaaagttggagatcctcatttaaatc |
50525308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 50525717 - 50525601
Alignment:
| Q |
9 |
gagatgaatagaagttgttgccattagtgttgcacccatgattgtgtttctcaatgtttgtacagcaagtatatttttcttctcattgtcctgcaaaaat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
50525717 |
gagaagaatagaagttgttgccattagtgttgcacccatgattgtgtttctcaatgtttgtacagcaagtatatttttcttctcgttgtcctgcaaaaat |
50525618 |
T |
|
| Q |
109 |
attcatcagtacttttg |
125 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
50525617 |
attcatcagtacttttg |
50525601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University