View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2916_low_8 (Length: 419)
Name: NF2916_low_8
Description: NF2916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2916_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 33169231 - 33168831
Alignment:
| Q |
1 |
tggcctaaacaaaggcatcatcctcatctcgcaagtacatacctatacttgttctattaagcttatgcgaaaaagaggcatcaatattacatttgagtca |
100 |
Q |
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| T |
33169231 |
tggcctaaacaaaagcatcatcctcatctcgcaagtacatacctatacttgttctatttagcttatgcgaaaaagaggcatcaatattacatttgagtca |
33169132 |
T |
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| Q |
101 |
accacgttgtgacctataccattgtacctggtttgaatcggcttgtggtgcattgagatgctggcttgttggtgtagaagtaaaaggcatcgccgttaag |
200 |
Q |
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| T |
33169131 |
accaagttgtgacctataccattgtacctggtttgaatcggcttgtggtgcattgagatgctggcttgttggtatagaagtaaaaggcatcgccgttaag |
33169032 |
T |
|
| Q |
201 |
actgtcatgctttgtgt-atccatgcaggaatgtcgtgaggttgatgtcaagagcagctgtcgtagagcatttgccagcgtccattcctcttatcaaatg |
299 |
Q |
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| T |
33169031 |
actgtcatgctttgtgtgatccgtgcaggaatgtcgtgaggttgatgtcaagagcagctgtcgtagagcatttgccagcgtccattcctcttatcaaatg |
33168932 |
T |
|
| Q |
300 |
atgggcgcgctctaccacttgcgcgcatagctcattaacatcgtgccatggtttaagattcccgtgttgtagtaataagaagacggcttctgatgtcgaa |
399 |
Q |
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| T |
33168931 |
atgggcgcactctaccacttgcgcgcatagctcattaacatcgtgccatggtttaagattcccgtgttgtagtaataagaagacggcttctgatgtcgaa |
33168832 |
T |
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| Q |
400 |
g |
400 |
Q |
| |
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| T |
33168831 |
g |
33168831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 22956330 - 22956281
Alignment:
| Q |
307 |
cgctctaccacttgcgcgcatagctcattaacatcgtgccatggtttaag |
356 |
Q |
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| T |
22956330 |
cgctctaccacttgtgtgcatagctcattaacatcttgccatgatttaag |
22956281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 189
Target Start/End: Complemental strand, 21511345 - 21511224
Alignment:
| Q |
68 |
cgaaaaagaggcatcaatattacatttgagtcaaccacgttgtgacctataccattgtacctggtttgaatcggcttgtggtgcattgagatgctggctt |
167 |
Q |
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||||||||| ||||||||||||||||||||| ||||| ||| |||| ||||| ||||||||| | | || ||| || |||| ||||| |||||| |
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| T |
21511345 |
cgaaaaagaagcatcaatattacatttgagttgaccacattgcaacctctaccaacgtacctggtccgtaatggtttgcggctcattaagatgttggctt |
21511246 |
T |
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| Q |
168 |
gttggtgtagaagtaaaaggca |
189 |
Q |
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|||||| ||||||| |||||| |
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| T |
21511245 |
gttggtccagaagtagaaggca |
21511224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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