View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2917_high_1 (Length: 577)
Name: NF2917_high_1
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 257 - 561
Target Start/End: Original strand, 40517983 - 40518287
Alignment:
| Q |
257 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcctgcatctataaatactaa |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40517983 |
taattgccttgcctttatcatccgcagccaatgaattaattcctccttaatactataatttacgaaataggatatgctctcttgcatctataaatactaa |
40518082 |
T |
|
| Q |
357 |
tatctcgagttggatagagttataatataccatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40518083 |
tatctcgagttggatagagttataatatacgatgaaaaattcctctcacgactagtagttaaatctggttccataactagttaaaatagatgagacccga |
40518182 |
T |
|
| Q |
457 |
actatcttatacaattgaaaattaaataatctaacgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttctcccttgctag |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40518183 |
actatcttatacaattgaaaattaaataatctaatgtgcgcatatatattgatgataatatgccaggatcatcccatgtccgtaatttttcccttgctag |
40518282 |
T |
|
| Q |
557 |
tttga |
561 |
Q |
| |
|
||||| |
|
|
| T |
40518283 |
tttga |
40518287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 40517177 - 40517425
Alignment:
| Q |
18 |
agaccgggaaacaatgacttgccaataaaaaatgctgaaactgtaggcttgagcttacatttgcagtgttattttttcccacttgcatggctacacatta |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517177 |
agaccgggaaacaatgacttgcgcataaaaaatgctgaaactgtgggcatgagcttacatttgcagtgttattttttcccacttgcatggctacacatta |
40517276 |
T |
|
| Q |
118 |
attgtcattccgatcctaatcttcctctcnnnnnnnncttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgagagcatatatgtaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
40517277 |
attgtcattccgatcctaatcttcctctcttttttttcttcttccaagttttaacaacgtgcactccatcatgggtgtaattgcgagatcatatatttaa |
40517376 |
T |
|
| Q |
218 |
ttaattccgagagcatatcataaacgttgacaccatatataattgcctt |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517377 |
ttaattccgagagcatatcataaacgttgacaccatatataattgcctt |
40517425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University