View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2917_high_14 (Length: 252)
Name: NF2917_high_14
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_high_14 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45179029 - 45179267
Alignment:
| Q |
1 |
agtaaattgcaattgtgtgtgtgcgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatcttatatttgnnnnnnnt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45179029 |
agtaaattgcaattgtgtgtgtccgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatcttatatttgaaaaaaat |
45179128 |
T |
|
| Q |
101 |
aatcatcgctatatcatattcatatccagattctggtaacacatttgtgcacaacacaatattgcaactaactttcggatatacttaatatttcataact |
200 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45179129 |
aatcatccctaaatcatattcatatccagattctggtaacacatttgtgcacaacacaatattgcaactaac-ttcggatatacttaatatttcataact |
45179227 |
T |
|
| Q |
201 |
taagctaagaactactcacttgacactggatctttacttc |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45179228 |
taagctaagaactactcacttgacactggatctttacttc |
45179267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University