View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_high_19 (Length: 226)
Name: NF2917_high_19
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 18035073 - 18035005
Alignment:
| Q |
6 |
acaatttctatagggtaagagagaaaaggcgcccaatttttcacatacctccaaaaactgggcgctcaa |
74 |
Q |
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| T |
18035073 |
acaatttctatagggtaagagagaaaaggcgcccaatttttcacatacctccaaaaactgggcgctcaa |
18035005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 18034962 - 18034854
Alignment:
| Q |
118 |
ttcctctgacacaacaagaactcctcacatnnnnnnnnnnnncccagcataatctcctttgcctaaaccttacatatggaaaccaaaatgatgaaaaatc |
217 |
Q |
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| T |
18034962 |
ttcctctgacacaacaagaactcctcacataaaaacaaaaaacccagcataaactcctttgcctaaaccttacatatggaacccaaaatgatgaaaaatg |
18034863 |
T |
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| Q |
218 |
ataattgtt |
226 |
Q |
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||||||||| |
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| T |
18034862 |
ataattgtt |
18034854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 18020835 - 18020792
Alignment:
| Q |
6 |
acaatttctatagggtaagagagaaaaggcgcccaatttttcac |
49 |
Q |
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|||||||||| | |||||||||||||||| |||||||||||||| |
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| T |
18020835 |
acaatttctacaaggtaagagagaaaaggtgcccaatttttcac |
18020792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 18020670 - 18020633
Alignment:
| Q |
160 |
cccagcataatctcctttgcctaaaccttacatatgga |
197 |
Q |
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| T |
18020670 |
cccagcataatcccctttgcttaaaccttacatatgga |
18020633 |
T |
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