View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_high_3 (Length: 387)
Name: NF2917_high_3
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 1082419 - 1082773
Alignment:
| Q |
22 |
ctgtgaaagaagatgacaatcatatgtaatattcttatattcccttatagttcactaattgcctattcgctttctttttgtgactttcggaatacataac |
121 |
Q |
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| T |
1082419 |
ctgtgaaagaagatgacaatcatatgtaatattcttatattcccttatagttcactaattgcctattcgctttctttttgtgactttcggaatacataac |
1082518 |
T |
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| Q |
122 |
taagtagcagtatgtaagattcaattcttgatcttttctgatgtaaaactcaatctt------ctttaaacagaatggagaaaaattatagtttcacgaa |
215 |
Q |
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| T |
1082519 |
taagtagcagtatgtaagattcaattcttgatcttttctgatgtaaaactcaatcttgtttttctttaaacagaatggagaaaaattctagtttcacgaa |
1082618 |
T |
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| Q |
216 |
gtctcaagacaaggatatgaggcaatttgaggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaagaagcagtggcaa |
315 |
Q |
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| T |
1082619 |
gtctcaagacaaggatatgaggcaatttgaggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaagaagcagtggcaa |
1082718 |
T |
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| Q |
316 |
gagcaggttgaacttgagaaggaattggaaaatgaactaactcagctcatgaaca |
370 |
Q |
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| T |
1082719 |
gagcaggttgaacttgagaaggaattggaaaatgaactaactcagctcatgaaca |
1082773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 1088509 - 1088631
Alignment:
| Q |
245 |
aggcagtgagagataatatcttaaaaacacatggtgaaaaacagttggctctgaagaagaagcagtggcaagagcaggttgaacttgagaaggaattgga |
344 |
Q |
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| T |
1088509 |
aggcagcgagagataatatcttaagaatgcatgaagaaaaacggttggctctgaagaagtat---ttgcaagagcaagttgaacttgagaaggaattgga |
1088605 |
T |
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| Q |
345 |
aaatgaactaactcagctcatgaaca |
370 |
Q |
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| T |
1088606 |
aaatgaaccaactcagctcatgaaca |
1088631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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