View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2917_high_8 (Length: 320)
Name: NF2917_high_8
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 9217393 - 9217684
Alignment:
| Q |
19 |
ttcattgcattaattgggtgtgaatgagtggatttatttcctcattgcctagagatatgagttgtgtgtataaggtttaggcagccattaccttacaagc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9217393 |
ttcattgcattaattgggtgtgaatgagtggatttatttcctcattgcctagagatatgagttgtgtgtataaggtttaggcagccattaccttacaagc |
9217492 |
T |
|
| Q |
119 |
cagtttagtaagactaaacccgacacaaatgttaagatagtaccagagcctatcctagatatgttattggacttctggtattgtccatccttcaggtcca |
218 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9217493 |
cagtttagtaagactaagcctgacacaaatgttaagatagtaccagagcctatcctagatatgttattggacttctggtattgtccatccttcaggtcca |
9217592 |
T |
|
| Q |
219 |
ttgagcccgatcatgagggagtgtgttgaaaattccaccttcattgtggcccgcccttaactgcataattatgggatttttgtcgccttcat |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9217593 |
ttgagcccgatcatgagggggtgtgttgaaaattccaccttcattgtggcccgcccttaactgcataattatgggaattttgtcgccttcat |
9217684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 9216948 - 9217198
Alignment:
| Q |
19 |
ttcattgcattaattgggtgtgaatgagtggatttatttcctcattgcctagagatatgagttgtgtgtataaggtttaggcagccattaccttacaagc |
118 |
Q |
| |
|
|||||||| ||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || || | |
|
|
| T |
9216948 |
ttcattgcgttaattgagtgagaatgaatggatttatttcctcattgcctagagatatgacttgtgtgtataaggtttgggcatccattaccataaaatc |
9217047 |
T |
|
| Q |
119 |
cagtttagtaagactaaacccgacacaaatgtt--aagatagtaccagagcctatcctagatatgttattggacttctggtattgtccatccttcaggtc |
216 |
Q |
| |
|
| |||| |||||| | | |||||||||| || | |||||||| ||||||||| ||||||||||||||||||||| | || |||||| ||||||| | |
|
|
| T |
9217048 |
cggttttgtaagattgagtccgacacaaaaattctacgatagtacgagagcctattctagatatgttattggacttccgataatgtccacccttcagtcc |
9217147 |
T |
|
| Q |
217 |
cattgagcccgatcatgagggagtgtgttgaaaattccaccttcattgtgg |
267 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
9217148 |
cattgagcccgatcatgagggggtgtgttaaaaattccaccttcattgtgg |
9217198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 9216503 - 9216795
Alignment:
| Q |
19 |
ttcattgcattaattgggtgtgaatgagtggatttatttcctcattgcctagagatatgagttgtgtgtataaggtttaggcagccattaccttacaagc |
118 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| |||| |||| | ||||| ||| |
|
|
| T |
9216503 |
ttcattgatttaattgagagtgaatgagtggatttattccctcattgcctagagatatcacttgtgtgtataaggtttgggcatccatcatcttactagc |
9216602 |
T |
|
| Q |
119 |
cagtttagtaagactaaacccgacacaaatgt-taagatagtaccagagcctatcctagatatgttattggacttctggtattgtccatccttcaggtcc |
217 |
Q |
| |
|
|||| |||| | || |||||||||| | |||||||||| || |||||| ||||||||||||||||||||| |||||||||| | || ||| || |
|
|
| T |
9216603 |
tggttttgtaaaagctaatccgacacaaaattctaagatagtattagtgcctattctagatatgttattggacttcatgtattgtccaccatttaggccc |
9216702 |
T |
|
| Q |
218 |
attgagcccgatcatgagggagtgtgttgaaaattccaccttcattgtggcccgcccttaactgcataattatgggatttttgtcgccttcat |
310 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| | |||||||||| ||| |||||| || | |||||||| ||| |||| ||| | |||||| |
|
|
| T |
9216703 |
attgagcccgagcatgagggggtgtgttgaaaacttcaccttcattatggtccgcccctagcagcataattgtggcatttgtgttgtcttcat |
9216795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 41590529 - 41590417
Alignment:
| Q |
151 |
taagatagtaccagagcctatcctagatatgttattggacttctggtattgtccatccttcaggtccattgagcccgatcatgagggagtgtgttgaaaa |
250 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||| ||| |||| |||||| ||||||| |||| |||||| || || || |||||||||||| |
|
|
| T |
41590529 |
taagatggtatcagagcctatcctagatatgtta-tgggcttactgtatcgtccatacttcaggctaattgggcccgagcaggaaggggtgtgttgaaaa |
41590431 |
T |
|
| Q |
251 |
ttccaccttcattg |
264 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
41590430 |
ttccgccttcattg |
41590417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University