View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2917_low_14 (Length: 319)

Name: NF2917_low_14
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2917_low_14
NF2917_low_14
[»] chr4 (4 HSPs)
chr4 (15-274)||(41206428-41206685)
chr4 (282-319)||(26202466-26202503)
chr4 (282-319)||(30441608-30441645)
chr4 (282-319)||(53177098-53177135)
[»] chr2 (6 HSPs)
chr2 (275-319)||(15808072-15808116)
chr2 (268-319)||(10477591-10477642)
chr2 (273-319)||(17179331-17179377)
chr2 (278-319)||(17858664-17858705)
chr2 (271-319)||(21545149-21545197)
chr2 (271-319)||(41313347-41313395)
[»] chr1 (2 HSPs)
chr1 (67-113)||(32623224-32623270)
chr1 (282-319)||(31860538-31860575)
[»] chr6 (1 HSPs)
chr6 (59-116)||(5466944-5467001)
[»] chr7 (6 HSPs)
chr7 (276-319)||(35088042-35088085)
chr7 (75-113)||(15019070-15019108)
chr7 (273-319)||(43704598-43704644)
chr7 (270-319)||(18668750-18668799)
chr7 (282-319)||(43705622-43705659)
chr7 (282-318)||(47810220-47810256)
[»] chr5 (4 HSPs)
chr5 (62-105)||(36975937-36975980)
chr5 (282-319)||(18693697-18693734)
chr5 (282-319)||(32780162-32780199)
chr5 (76-108)||(22599125-22599157)
[»] scaffold0839 (1 HSPs)
scaffold0839 (270-319)||(205-254)
[»] chr8 (3 HSPs)
chr8 (282-319)||(15989350-15989387)
chr8 (278-319)||(40103018-40103059)
chr8 (271-319)||(40102209-40102257)
[»] chr3 (4 HSPs)
chr3 (282-319)||(19283733-19283770)
chr3 (72-109)||(51188667-51188704)
chr3 (282-319)||(51213657-51213694)
chr3 (287-319)||(42570016-42570048)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 41206428 - 41206685
Alignment:
Q  15 tcattctcacgttggaaccacttgatgggactcattgtgttaa-cgttccacatcgaatagataaaagtgtttgatatggtatttaagtcatgagattct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||    
T  41206428 tcattctcacgttggaaccacttgatgggactcattgtgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgagattct 41206527  T
Q  114 tccctgaaaatattcactcaataaaccagnnnnnnngggttaagctctcctcacatgttcctcaatattcagagaaagcttctttaaggatggttttgag 213  Q
    ||||| |||||  |||| |||||||||||       |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41206528 tccctaaaaat--tcacccaataaaccagtctttt-gggttaagctatcctcacaggttcctcaatattcagagaaagcttctttaaggatggttttgag 41206624  T
Q  214 ttaccaaacttttgctttccctcattctaatttttatgattctatgttcctttcaattttt 274  Q
    |||||||| |||||||||||||| ||||||||||| ||||| ||||||| ||||| |||||    
T  41206625 ttaccaaatttttgctttccctcgttctaatttttctgattttatgttcttttcatttttt 41206685  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 26202503 - 26202466
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  26202503 taatacatgttttggtcccttaacttatttttgaattt 26202466  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 30441608 - 30441645
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30441608 taatacatgttttagtcccttaacttatttttgaattt 30441645  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 53177135 - 53177098
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  53177135 taatacatgttttggtcccttaacttatttttgaattt 53177098  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 15808072 - 15808116
Alignment:
Q  275 tatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||    
T  15808072 tatggcttaattcatgttttggtcccttaacttatttttgaattt 15808116  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 10477642 - 10477591
Alignment:
Q  268 aattttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| |||| |||| |||||||| ||||||||||||||||||||||||    
T  10477642 aattttttttggcttaatacatgttttggtcccttaacttatttttgaattt 10477591  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 17179377 - 17179331
Alignment:
Q  273 tttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| |||| |||| ||| ||||||||||||||||||||||||    
T  17179377 tttatggcttaatacatgctttggtcccttaacttatttttgaattt 17179331  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 17858705 - 17858664
Alignment:
Q  278 ggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  17858705 ggcctaatacatgatttggtcccttaacttatttttgaattt 17858664  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 21545197 - 21545149
Alignment:
Q  271 tttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| ||||| |||| |||||||| ||||||||||||||||||| ||||    
T  21545197 ttttaatggcttaatacatgttttggtcccttaacttatttttggattt 21545149  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 41313395 - 41313347
Alignment:
Q  271 tttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    ||||| |||| |||| |||||||| ||||||||||||||||| ||||||    
T  41313395 tttttttggcttaatacatgttttggtcccttaacttattttcgaattt 41313347  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 32623270 - 32623224
Alignment:
Q  67 tcgaatagataaaagtgtttgatatggtatttaagtcatgagattct 113  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||    
T  32623270 tcgaaaagataaaaatgtttgatatggtatttaagacatgagattct 32623224  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 31860575 - 31860538
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  31860575 taatacatgttttggtcccttaacttatttttgaattt 31860538  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 5466944 - 5467001
Alignment:
Q  59 gttccacatcgaatagataaaagtgtttgatatggtatttaagtcatgagattcttcc 116  Q
    |||||||||||| ||||| |||||| ||||| ||||| ||||||||||||| ||||||    
T  5466944 gttccacatcgactagattaaagtgattgatgtggtaattaagtcatgagactcttcc 5467001  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 319
Target Start/End: Complemental strand, 35088085 - 35088042
Alignment:
Q  276 atggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  35088085 atggcttaatacatgttttggtcccttaacttatttttgaattt 35088042  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 15019070 - 15019108
Alignment:
Q  75 ataaaagtgtttgatatggtatttaagtcatgagattct 113  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  15019070 ataaaagtgtttgatgtggtatttaagtcatgaggttct 15019108  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 43704598 - 43704644
Alignment:
Q  273 tttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| |||| |||| ||| ||||||||||||||||||||||||    
T  43704598 tttatggcttaatacatgctttggtcccttaacttatttttgaattt 43704644  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Original strand, 18668750 - 18668799
Alignment:
Q  270 ttttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||| |||| |||| |||| ||| ||||||||||||||||||||||||    
T  18668750 ttttttttggcttaatacatgctttggtcccttaacttatttttgaattt 18668799  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 43705659 - 43705622
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  43705659 taatacatgttttggtcccttaacttatttttgaattt 43705622  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 47810256 - 47810220
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaatt 318  Q
    |||| |||||||| |||||||||||||||||||||||    
T  47810256 taatacatgttttggtcccttaacttatttttgaatt 47810220  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 36975937 - 36975980
Alignment:
Q  62 ccacatcgaatagataaaagtgtttgatatggtatttaagtcat 105  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||    
T  36975937 ccacatcgagtagatcaaagtgtttgatgtggtatttaagtcat 36975980  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 18693697 - 18693734
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  18693697 taatacatgttttggtcccttaacttatttttgaattt 18693734  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 32780199 - 32780162
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  32780199 taatacatgttttggtcccttaacttatttttgaattt 32780162  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 22599157 - 22599125
Alignment:
Q  76 taaaagtgtttgatatggtatttaagtcatgag 108  Q
    |||||||||||||||||||| ||||||||||||    
T  22599157 taaaagtgtttgatatggtacttaagtcatgag 22599125  T

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Target: scaffold0839 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 254 - 205
Alignment:
Q  270 ttttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    ||||||||||| |||| |||| ||| |||||||||||||||||| |||||    
T  254 ttttttatggcttaatacatgatttggtcccttaacttatttttaaattt 205  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 15989387 - 15989350
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  15989387 taatacatgttttggtcccttaacttatttttgaattt 15989350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 40103059 - 40103018
Alignment:
Q  278 ggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| |||| ||| ||||||||||||||||||||||||    
T  40103059 ggcctaatacatgctttggtcccttaacttatttttgaattt 40103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 319
Target Start/End: Original strand, 40102209 - 40102257
Alignment:
Q  271 tttttatggcctaattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||||| ||| |||| |||| ||| ||||||||||||||||||||||||    
T  40102209 tttttaaggcttaatacatgctttggtcccttaacttatttttgaattt 40102257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 19283733 - 19283770
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  19283733 taatacatgttttggtcccttaacttatttttgaattt 19283770  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 51188667 - 51188704
Alignment:
Q  72 tagataaaagtgtttgatatggtatttaagtcatgaga 109  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  51188667 tagataaaagtctttaatatggtatttaagtcatgaga 51188704  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 51213694 - 51213657
Alignment:
Q  282 taattcatgtttttgtcccttaacttatttttgaattt 319  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  51213694 taatacatgttttagtcccttaacttatttttgaattt 51213657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 42570016 - 42570048
Alignment:
Q  287 catgtttttgtcccttaacttatttttgaattt 319  Q
    |||||||| ||||||||||||||||||||||||    
T  42570016 catgttttggtcccttaacttatttttgaattt 42570048  T

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