View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2917_low_18 (Length: 299)

Name: NF2917_low_18
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2917_low_18
NF2917_low_18
[»] chr5 (18 HSPs)
chr5 (119-250)||(3647467-3647602)
chr5 (1-108)||(10591984-10592091)
chr5 (1-97)||(5123486-5123582)
chr5 (1-107)||(31113391-31113497)
chr5 (1-104)||(30784967-30785070)
chr5 (1-73)||(18909313-18909385)
chr5 (26-97)||(22187986-22188057)
chr5 (10-81)||(36212962-36213033)
chr5 (11-97)||(29553606-29553692)
chr5 (33-108)||(25983754-25983829)
chr5 (43-96)||(12682734-12682787)
chr5 (7-104)||(19329584-19329681)
chr5 (52-108)||(373741-373797)
chr5 (11-86)||(32313105-32313180)
chr5 (51-85)||(22402074-22402108)
chr5 (1-83)||(41446654-41446736)
chr5 (36-107)||(5051681-5051753)
chr5 (11-78)||(15386108-15386176)
[»] chr8 (16 HSPs)
chr8 (1-108)||(4125001-4125108)
chr8 (1-108)||(2743990-2744097)
chr8 (5-108)||(13468722-13468825)
chr8 (1-97)||(7839241-7839337)
chr8 (1-93)||(12958077-12958169)
chr8 (1-107)||(19715703-19715810)
chr8 (1-90)||(30936061-30936150)
chr8 (48-108)||(39086856-39086916)
chr8 (26-108)||(8521780-8521861)
chr8 (1-95)||(30055991-30056085)
chr8 (1-83)||(36994502-36994584)
chr8 (1-74)||(15682986-15683059)
chr8 (25-97)||(40320177-40320249)
chr8 (27-104)||(16700577-16700655)
chr8 (40-85)||(24988595-24988640)
chr8 (12-91)||(28377726-28377804)
[»] chr4 (25 HSPs)
chr4 (1-108)||(31307043-31307150)
chr4 (1-106)||(51626285-51626390)
chr4 (1-104)||(38766146-38766249)
chr4 (1-90)||(13948587-13948676)
chr4 (1-104)||(9012327-9012430)
chr4 (1-108)||(46016206-46016313)
chr4 (1-95)||(35334088-35334182)
chr4 (12-108)||(33529325-33529421)
chr4 (4-108)||(35972403-35972507)
chr4 (1-97)||(14854662-14854758)
chr4 (2-97)||(32005134-32005229)
chr4 (1-97)||(38844156-38844252)
chr4 (1-95)||(17135153-17135247)
chr4 (12-86)||(36990093-36990167)
chr4 (11-97)||(45994589-45994675)
chr4 (1-95)||(46250545-46250639)
chr4 (15-107)||(18841556-18841649)
chr4 (2-83)||(13686659-13686741)
chr4 (48-97)||(15133479-15133528)
chr4 (67-104)||(37241357-37241394)
chr4 (11-106)||(31308364-31308459)
chr4 (11-74)||(47023469-47023532)
chr4 (11-97)||(1459538-1459624)
chr4 (5-85)||(22017525-22017605)
chr4 (1-93)||(56447115-56447206)
[»] chr3 (21 HSPs)
chr3 (7-95)||(27763784-27763872)
chr3 (1-108)||(30995942-30996049)
chr3 (1-106)||(38331185-38331290)
chr3 (1-108)||(1642663-1642770)
chr3 (1-97)||(20861305-20861401)
chr3 (1-108)||(48204288-48204395)
chr3 (1-104)||(55123154-55123257)
chr3 (48-108)||(8757448-8757508)
chr3 (1-108)||(25224756-25224863)
chr3 (1-108)||(40294669-40294776)
chr3 (1-97)||(39950269-39950365)
chr3 (52-108)||(40318426-40318482)
chr3 (1-81)||(14352615-14352694)
chr3 (1-107)||(22288292-22288398)
chr3 (33-95)||(44941255-44941316)
chr3 (11-108)||(46725492-46725588)
chr3 (1-102)||(43621294-43621396)
chr3 (2-75)||(15446054-15446127)
chr3 (1-102)||(48210943-48211044)
chr3 (12-108)||(25739155-25739252)
chr3 (12-108)||(15283139-15283235)
[»] chr7 (22 HSPs)
chr7 (1-108)||(29059862-29059969)
chr7 (1-108)||(31492160-31492267)
chr7 (15-104)||(37339714-37339803)
chr7 (1-108)||(19477229-19477333)
chr7 (1-104)||(21747021-21747124)
chr7 (1-71)||(14545000-14545070)
chr7 (1-85)||(8839281-8839365)
chr7 (11-96)||(20207564-20207649)
chr7 (48-97)||(28665194-28665243)
chr7 (20-85)||(29428792-29428857)
chr7 (3-104)||(42741790-42741890)
chr7 (36-108)||(45778956-45779028)
chr7 (18-97)||(24172283-24172362)
chr7 (9-107)||(11486722-11486820)
chr7 (5-99)||(28828751-28828845)
chr7 (47-97)||(35707949-35707999)
chr7 (11-97)||(28537457-28537539)
chr7 (39-104)||(31776513-31776578)
chr7 (52-105)||(36821060-36821113)
chr7 (1-69)||(13254117-13254185)
chr7 (11-106)||(46373740-46373837)
chr7 (12-105)||(25241105-25241198)
[»] chr1 (28 HSPs)
chr1 (4-98)||(42297429-42297523)
chr1 (1-107)||(18428120-18428225)
chr1 (1-97)||(28724729-28724825)
chr1 (1-108)||(16756139-16756246)
chr1 (15-106)||(15642526-15642617)
chr1 (11-108)||(36806678-36806775)
chr1 (1-97)||(7242795-7242891)
chr1 (1-97)||(9780977-9781073)
chr1 (1-108)||(25655241-25655348)
chr1 (14-107)||(12035620-12035713)
chr1 (1-108)||(46864148-46864255)
chr1 (31-108)||(49071664-49071741)
chr1 (15-107)||(44913180-44913272)
chr1 (1-62)||(36522259-36522320)
chr1 (1-94)||(39547355-39547448)
chr1 (1-97)||(22022177-22022273)
chr1 (11-106)||(32534150-32534244)
chr1 (33-103)||(10750686-10750756)
chr1 (1-75)||(24801438-24801512)
chr1 (15-104)||(10367575-10367664)
chr1 (1-102)||(6218538-6218641)
chr1 (51-108)||(6607669-6607728)
chr1 (11-83)||(33721007-33721079)
chr1 (10-71)||(32883561-32883622)
chr1 (9-76)||(28286442-28286509)
chr1 (27-93)||(34946462-34946529)
chr1 (1-108)||(45806293-45806400)
chr1 (12-62)||(11530664-11530714)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-108)||(26388-26495)
[»] chr2 (28 HSPs)
chr2 (1-106)||(31579208-31579313)
chr2 (1-108)||(5394454-5394560)
chr2 (18-108)||(37179978-37180068)
chr2 (1-106)||(42745095-42745200)
chr2 (1-95)||(9438126-9438220)
chr2 (12-97)||(17981566-17981650)
chr2 (32-104)||(25423832-25423904)
chr2 (33-108)||(37092172-37092247)
chr2 (14-104)||(12233056-12233146)
chr2 (11-95)||(18105353-18105436)
chr2 (27-96)||(14551557-14551626)
chr2 (39-105)||(17655756-17655824)
chr2 (1-73)||(14121894-14121966)
chr2 (11-62)||(17183733-17183784)
chr2 (35-104)||(38464046-38464115)
chr2 (1-93)||(7020352-7020443)
chr2 (21-108)||(32642959-32643047)
chr2 (26-88)||(26296441-26296503)
chr2 (1-85)||(38743795-38743879)
chr2 (39-95)||(39562260-39562316)
chr2 (58-97)||(1682136-1682175)
chr2 (48-106)||(38372973-38373031)
chr2 (13-106)||(993822-993915)
chr2 (1-42)||(44732616-44732657)
chr2 (1-45)||(12133270-12133314)
chr2 (33-97)||(13835445-13835509)
chr2 (41-97)||(24412915-24412971)
chr2 (80-108)||(33757104-33757132)
[»] chr6 (18 HSPs)
chr6 (1-97)||(12411205-12411301)
chr6 (1-97)||(28099300-28099396)
chr6 (2-104)||(31412180-31412282)
chr6 (11-108)||(21910272-21910368)
chr6 (1-97)||(12836885-12836981)
chr6 (1-71)||(423712-423782)
chr6 (21-95)||(9536844-9536918)
chr6 (1-83)||(3660650-3660731)
chr6 (9-88)||(27735542-27735621)
chr6 (1-82)||(21028845-21028924)
chr6 (1-82)||(21028982-21029061)
chr6 (1-99)||(31107479-31107577)
chr6 (11-83)||(28933205-28933277)
chr6 (12-86)||(1534320-1534394)
chr6 (12-105)||(278459-278552)
chr6 (1-106)||(25084091-25084196)
chr6 (1-96)||(17177195-17177290)
chr6 (41-97)||(15614561-15614617)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-97)||(27213-27296)
[»] scaffold0013 (1 HSPs)
scaffold0013 (48-107)||(29130-29189)
[»] scaffold0071 (1 HSPs)
scaffold0071 (2-75)||(16065-16138)


Alignment Details
Target: chr5 (Bit Score: 119; Significance: 8e-61; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 3647602 - 3647467
Alignment:
Q  119 aaatactcctacatcaattttaatagatttatttgtctttta----taaaaggaaaaggggaagtatattgttgacttttgatgaaataaaaatgtgatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3647602 aaatactcctacatcaattttaatagatttatttgtcttttaattataaaaggaaaaggggaagtatattgttgacttttgatgaaataaaaatgtgatg 3647503  T
Q  215 gtgataaactcgaaacaacgttaataaatcctggtc 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  3647502 gtgataaactcgaaacaacgttaataaatcctggtc 3647467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10591984 - 10592091
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10591984 atgcagcagtgttaaaactcttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccga 10592083  T
Q  101 tttacacc 108  Q
    ||||||||    
T  10592084 tttacacc 10592091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 5123582 - 5123486
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5123582 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 5123486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31113391 - 31113497
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| || ||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||    
T  31113391 atgcagcagtgttaaaactcttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccga 31113490  T
Q  101 tttacac 107  Q
    |||||||    
T  31113491 tttacac 31113497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30785070 - 30784967
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||  |||||||||||||| |||| |||||| |||||||   || ||||||| || ||||||||||||||||||||||||||||||||||||||     
T  30785070 atgcagcaacgttaaaactcttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctgg 30784971  T
Q  101 ttta 104  Q
    ||||    
T  30784970 ttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18909385 - 18909313
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtct 73  Q
    |||||||||||||||||||||||| |||| | |||||  ||||||||||||||||||||||||||||||||||    
T  18909385 atgcagcagtgttaaaactcttagggagaatttgccgctcatttgaatcccacaatgctcgagggattagtct 18909313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 22188057 - 22187986
Alignment:
Q  26 gagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||| | |||||  ||||||||| || |||||||||||||||||||||||||||||||||||||    
T  22188057 gagagtctgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacc 22187986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 36212962 - 36213033
Alignment:
Q  10 tgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagtt 81  Q
    ||||||||||||||| |||||| ||||| ||||||   ||||||||||||||||||||| ||||||||||||    
T  36212962 tgttaaaactcttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 29553606 - 29553692
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||| |||||| || ||||||||||  ||||| ||||||| || |||||||||| ||||||| ||| ||||||||||    
T  29553606 gttaaaactcttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacc 29553692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 25983754 - 25983829
Alignment:
Q  33 tgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    ||||| |||||||| ||||| |||| ||||| ||||||||||||||||||| | ||||||||||| | ||||||||    
T  25983754 tgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacc 25983829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 12682734 - 12682787
Alignment:
Q  43 ttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 96  Q
    ||||||||||| ||  |||||| |||||||| ||||||||||||||||||||||    
T  12682734 ttgaatcccaccatattcgaggaattagtcttcgcagttgcgcgcggaggatac 12682787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 19329584 - 19329681
Alignment:
Q  7 cagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    ||||||||||||||||||| ||||| |||| || | |||  || ||||| | |||||||||||||||   ||||||  || |||||||||||||||||    
T  19329584 cagtgttaaaactcttagaaagagtttgccttcaaattgggtctcacaaggttcgagggattagtctaatcagttggacgtggaggatacctgattta 19329681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 373797 - 373741
Alignment:
Q  52 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||| || |||||||| ||||||||||||||| |||||||||||  |||||||||    
T  373797 acaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacacc 373741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 32313180 - 32313105
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcg 86  Q
    |||||||||||||  |||||| ||| | |||||| | ||| ||||| |||||||||||||||||  ||||||||||    
T  32313180 gttaaaactcttaaggagagtttgctgcccatttaagtcctacaatactcgagggattagtctctacagttgcgcg 32313105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 22402074 - 22402108
Alignment:
Q  51 cacaatgctcgagggattagtctccgcagttgcgc 85  Q
    ||||||||||||||||||| |||||||||||||||    
T  22402074 cacaatgctcgagggattaatctccgcagttgcgc 22402108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 41446736 - 41446654
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    |||||| | |||||||||||||| ||||||| | |||  ||||||  ||||||||  |||||| ||||||||||||| |||||    
T  41446736 atgcagtaatgttaaaactcttacagagagtttaccgctcatttgggtcccacaagactcgagagattagtctccgctgttgc 41446654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 5051681 - 5051753
Alignment:
Q  36 cgtccatttgaatcccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacctgatttacac 107  Q
    ||||||||||| || ||||||||||||| ||||||| || || ||||||| || |||||| || |||||||||    
T  5051681 cgtccatttgagtctcacaatgctcgagagattagtttctgcaagttgcgtgcagaggatgcccgatttacac 5051753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 15386176 - 15386108
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatg-ctcgagggattagtctccgca 78  Q
    ||||||| ||||||  ||||| ||||   |||||||||||||||||| ||||| |||||||||||||||    
T  15386176 gttaaaattcttaggaagagtttgccactcatttgaatcccacaatgtctcgatggattagtctccgca 15386108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4125108 - 4125001
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||| ||||||||||||||| ||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4125108 atgcagcactgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccga 4125009  T
Q  101 tttacacc 108  Q
    ||||||||    
T  4125008 tttacacc 4125001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 2743990 - 2744097
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| |||||  || ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2743990 atgcagcagtgttaaaactcttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgg 2744089  T
Q  101 tttacacc 108  Q
    ||||||||    
T  2744090 tttacacc 2744097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 13468825 - 13468722
Alignment:
Q  5 agcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    ||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| | ||||    
T  13468825 agcagcgttaaaactcttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggttta 13468726  T
Q  105 cacc 108  Q
    ||||    
T  13468725 cacc 13468722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7839337 - 7839241
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||  ||||||||||||| |||||  ||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7839337 atgcagcagctttaaaactcttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 7839241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 12958169 - 12958077
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggagga 93  Q
    ||||||||| |||||||||||||| ||||| ||| || |||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  12958169 atgcagcagcgttaaaactcttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 19715810 - 19715703
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgaggg-attagtctccgcagttgcgcgcggaggatacctg 99  Q
    ||||||||| ||||||||||| || |||||  ||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  19715810 atgcagcagcgttaaaactctcagggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctg 19715711  T
Q  100 atttacac 107  Q
     |||||||    
T  19715710 gtttacac 19715703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 30936061 - 30936150
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcgga 90  Q
    ||||||||  |||||||||||||| ||||| |||||| |||||||  ||| |||||| ||||||||||||||||||||||||||||||||    
T  30936061 atgcagcaacgttaaaactcttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcgga 30936150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 39086856 - 39086916
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  39086856 tcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 8521780 - 8521861
Alignment:
Q  26 gagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||  | |||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||||| ||||||||||    
T  8521780 gagagtctgatgcccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacacc 8521861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30056085 - 30055991
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    |||||||||  ||||||||||||| ||||| ||||||||||||||  | |||||||||||||||||||||||||   ||||||| |||| |||||    
T  30056085 atgcagcagcattaaaactcttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggata 30055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36994584 - 36994502
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    ||||||||| |||||||||||||  |||||| ||| | |||||||  |||||||| |||||||||||||||||| ||||||||    
T  36994584 atgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 15682986 - 15683059
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctc 74  Q
    ||||||||| |||||||||||||| ||||| |||||| ||||||   |||||||||||||||||||||| ||||    
T  15682986 atgcagcagcgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 40320177 - 40320249
Alignment:
Q  25 agagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||| ||||||| ||||| ||||||| ||||||||| |||||||||| | |||||  |||||||||||||    
T  40320177 agagagtttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 16700655 - 16700577
Alignment:
Q  27 agagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgca-gttgcgcgcggaggatacctgattta 104  Q
    ||||| |||| ||||||| | ||| |||| |||||||| |||||||||  || ||||||||||||||||||||||||||    
T  16700655 agagtttgccatccatttaagtccaacaaagctcgaggaattagtctctacaagttgcgcgcggaggatacctgattta 16700577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 24988595 - 24988640
Alignment:
Q  40 catttgaatcccacaatgctcgagggattagtctccgcagttgcgc 85  Q
    ||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  24988595 catttgagtcccacaatactcgagggattagtctccgcaattgcgc 24988640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 28377726 - 28377804
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggag 91  Q
    |||||| |||||| |||||| ||||||| |||||| | | |||||||||| ||||||||||||  ||||| |||||||||    
T  28377726 ttaaaattcttagggagagtttgccgtctatttga-tgcgacaatgctcgcgggattagtctcatcagttacgcgcggag 28377804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31307150 - 31307043
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  31307150 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgg 31307051  T
Q  101 tttacacc 108  Q
    ||||||||    
T  31307050 tttacacc 31307043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 51626390 - 51626285
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||    
T  51626390 atgcagcagtgttaaaacttttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccga 51626291  T
Q  101 tttaca 106  Q
    ||||||    
T  51626290 tttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38766146 - 38766249
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38766146 atgcagcagcgttaaaactcttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccga 38766245  T
Q  101 ttta 104  Q
    ||||    
T  38766246 ttta 38766249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13948676 - 13948587
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcgga 90  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  13948676 atgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 9012327 - 9012430
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||||||| |||||||||| |||||  ||||| ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9012327 atgcagcagtgttcaaactcttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccga 9012426  T
Q  101 ttta 104  Q
    ||||    
T  9012427 ttta 9012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46016206 - 46016313
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||| | ||||||||||| ||||||||| |||||||||| ||    
T  46016206 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccga 46016305  T
Q  101 tttacacc 108  Q
    ||||||||    
T  46016306 tttacacc 46016313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 35334182 - 35334088
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||||||| |||||||||||||||||||||| |||| |||||||  ||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  35334182 atgcagcagagttaaaactcttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggata 35334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 33529325 - 33529421
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    ||||||||||||| |||||  ||||| |||||||  ||||||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  33529325 ttaaaactcttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacc 33529421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 35972403 - 35972507
Alignment:
Q  4 cagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattt 103  Q
    |||||| ||||||||| |||| |||||| ||||| |||||||  |||||| ||| |||||||||||||||||||||||||| |||||||||||||  |||    
T  35972403 cagcagcgttaaaactattagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagttt 35972502  T
Q  104 acacc 108  Q
    |||||    
T  35972503 acacc 35972507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 14854662 - 14854758
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||  |||||||||||||| |||||  ||||| |||||||  ||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  14854662 atgcagcatcgttaaaactcttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 32005229 - 32005134
Alignment:
Q  2 tgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||| |||||||||||||||||| |||||||||||| | ||||  ||| || |||||||||| |||||||||||||| ||  ||||||||||||||    
T  32005229 tgcatcagtgttaaaactcttagggagagtctgccgcctatttagatctcaaaatgctcgagagattagtctccgcaattatgcgcggaggatacc 32005134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 38844252 - 38844156
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||| ||| ||||||||||||||  ||||||||||| ||||||||  ||||||||||||||| ||||||||||  | ||| ||||| |||||||||    
T  38844252 atgcaacagcgttaaaactcttaggaagagtctgccgcccatttgacccccacaatgctcgagagattagtctctactgttacgcgcagaggatacc 38844156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17135153 - 17135247
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||||||| |||||||||||||| |||||| |||||  ||||||| ||||| ||  |||||||||||||||||   |||||||| |||||||||    
T  17135153 atgcagcagcgttaaaactcttagggagagtttgccgcgcatttgagtcccagaagactcgagggattagtctcaaaagttgcgcacggaggata 17135247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 36990167 - 36990093
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcg 86  Q
    ||||||||||| | || ||| |||||||||||||||||||||||||||||||| |||||| | ||||||| ||||    
T  36990167 ttaaaactcttggggaaagtttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagttacgcg 36990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 45994589 - 45994675
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||| ||||| ||| || |||||||  || ||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  45994589 gttaaaactcttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacc 45994675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 46250639 - 46250545
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    |||||||||||||||||||||||  || || |||||| |||||||  |||||| |||||||| | |||||||||||| |||| ||| ||||||||    
T  46250639 atgcagcagtgttaaaactcttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 18841556 - 18841649
Alignment:
Q  15 aaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgc-agttgcgcgcggaggatacctgatttacac 107  Q
    ||||||||||  ||||| ||||| | ||||| |||| |||| |||| |||||||||||||||| |||||||| ||||||||||||| |||||||    
T  18841556 aaactcttaggtagagtttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 13686659 - 13686741
Alignment:
Q  2 tgcagcagtgttaaaactctta-gagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    |||||||| ||||||||||||| | |||||| |||||||||||||  || ||||| ||||||| ||||||||||| |||||||    
T  13686659 tgcagcagcgttaaaactcttaagggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 15133479 - 15133528
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||    
T  15133479 tcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 37241394 - 37241357
Alignment:
Q  67 ttagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37241394 ttagtctccgcagttgcgcgcggaggatacctgattta 37241357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 31308364 - 31308459
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 106  Q
    ||||||||||||||  ||||||||||||| ||||   |||||||||| | ||||||||||||  | |||||| | |||||| |||||  |||||||    
T  31308364 gttaaaactcttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttaca 31308459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 47023469 - 47023532
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctc 74  Q
    |||||||||||||| |||||| || ||||||||||  ||||||||  ||||| |||||||||||    
T  47023469 gttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctc 47023532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 1459624 - 1459538
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||||||||  |||   || ||||||||| ||||||||| ||||||| |  ||||| |  ||||||||||||||||||||||    
T  1459624 gttaaaactcttagtaagaacttgtcgtccatttaaatcccacattgctcgatgagttagtatttgcagttgcgcgcggaggatacc 1459538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 85
Target Start/End: Original strand, 22017525 - 22017605
Alignment:
Q  5 agcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgc 85  Q
    |||||||||||||| ||||| || ||  ||||| | ||||||||| ||||||| ||||| ||||| ||||  |||||||||    
T  22017525 agcagtgttaaaacccttagggaaagcttgccgcctatttgaatcacacaatgatcgagcgattaatctctacagttgcgc 22017605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 56447206 - 56447115
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggagga 93  Q
    |||||||||||||||||||||||| |||||| |||   ||||||| || ||||||  || ||||||||| |||  ||| |||||||| |||||    
T  56447206 atgcagcagtgttaaaactcttagggagagtttgctacccatttggat-ccacaagacttgagggattaatctatgcaattgcgcgcagagga 56447115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 27763784 - 27763872
Alignment:
Q  7 cagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  27763784 cagtgttaaaactcttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggata 27763872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 30996049 - 30995942
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||| ||| |||||||||||||| |||||||||||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  30996049 atgcaacagcgttaaaactcttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctgg 30995950  T
Q  101 tttacacc 108  Q
    ||||||||    
T  30995949 tttacacc 30995942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38331185 - 38331290
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||| ||||||||||||||||||||  ||||| |||||||  |||||||||| | ||||||||||||||||||||||| ||||||||||||| ||    
T  38331185 atgcagcagcgttaaaactcttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccga 38331284  T
Q  101 tttaca 106  Q
    ||||||    
T  38331285 tttaca 38331290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1642663 - 1642770
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||| ||||||||||| |||| |||||||| |||||||||||  ||||||||| || ||||||||||| ||||||||||||||||||||||| | ||    
T  1642663 atgcagccgtgttaaaacttttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccga 1642762  T
Q  101 tttacacc 108  Q
    ||||||||    
T  1642763 tttacacc 1642770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20861305 - 20861401
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||| |||||||||||||| ||||| |||||| |||||||  | ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  20861305 atgcagcagcgttaaaactcttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacc 20861401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 48204395 - 48204288
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||  |||||||| ||||| |||||  || ||||||||||  | ||||||||||| |||||||||| ||||||||||||||||||||||||| ||    
T  48204395 atgcagcaacgttaaaacccttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccga 48204296  T
Q  101 tttacacc 108  Q
    ||||||||    
T  48204295 tttacacc 48204288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 55123154 - 55123257
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||| ||||||| |||||| |||||  |||   |||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  55123154 atgcagcagcgttaaaattcttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctga 55123253  T
Q  101 ttta 104  Q
    ||||    
T  55123254 ttta 55123257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 8757448 - 8757508
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  8757448 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacacc 8757508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25224756 - 25224863
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||| |||||||||||||  ||||   ||||| ||||||   ||||||||||||| |||||||||||||||||||||| ||||||||||||| |     
T  25224756 atgcagcagcgttaaaactcttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccgg 25224855  T
Q  101 tttacacc 108  Q
    ||||||||    
T  25224856 tttacacc 25224863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 40294669 - 40294776
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||| || ||||||||||||||| || ||  |||||  ||||||||||||||||| ||||| |||||||||||||||||||||| |  |||||||| ||    
T  40294669 atgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccga 40294768  T
Q  101 tttacacc 108  Q
    ||||||||    
T  40294769 tttacacc 40294776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 39950269 - 39950365
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||| ||||||| | |||| |||| |||| ||| |||||| |||| ||||||||||| ||||||||||||||||||||  ||||||||||||    
T  39950269 atgcagcagcgttaaaatttttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  52 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14352615 - 14352694
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagtt 81  Q
    |||||||||||||||||||||||  |||||  || |||||||||| || || |||| ||||||||||||||||||||||||    
T  14352615 atgcagcagtgttaaaactcttacggagagcttgtcgtccatttggatacc-caatactcgagggattagtctccgcagtt 14352694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 22288292 - 22288398
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||| || ||||||||||||||| ||||   || ||||||||||| |  |||||| ||| ||| ||||||||| ||||||| |||||||||||||| |     
T  22288292 atgcaacaatgttaaaactcttagggagaacttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccgg 22288391  T
Q  101 tttacac 107  Q
    |||||||    
T  22288392 tttacac 22288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 44941316 - 44941255
Alignment:
Q  33 tgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||| ||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  44941316 tgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggata 44941255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 46725492 - 46725588
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||| || ||| ||| |||||| ||  ||| |||||||| ||||||||||||||  ||||| |||||||||||||| || ||||||||    
T  46725492 gttaaaactcttagggatagtttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacc 46725588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43621396 - 43621294
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaa-tgctcgagggattagtctccgcagttgcgcgcggaggatacctg 99  Q
    ||||||||  ||||||||| |||| |||||  ||||  |||||| | || ||||| ||||||||||||||||||| | |||||||||| ||||||||| |    
T  43621396 atgcagcaacgttaaaacttttagggagagcttgcctcccatttaagtctcacaaatgctcgagggattagtctctgtagttgcgcgcagaggatacccg 43621297  T
Q  100 att 102  Q
    |||    
T  43621296 att 43621294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 15446054 - 15446127
Alignment:
Q  2 tgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctcc 75  Q
    |||||||||||||| | || ||  |||||| |||||||||||||  || |||||||||||| ||||||||||||    
T  15446054 tgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 48211044 - 48210943
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||  |||||||||||||  |||||  ||||||| ||||   ||||||||| ||||||| |||  ||||||||||||| |||||| |||||| ||    
T  48211044 atgcagcaacgttaaaactcttatggagagcttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacccga 48210945  T
Q  101 tt 102  Q
    ||    
T  48210944 tt 48210943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 25739155 - 25739252
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgca-gttgcgcgcggaggatacctgatttacacc 108  Q
    ||||||||||||| |||||| | ||| |||||||  ||||| ||  |||||   ||||||||||||| |||||| |||||||||||| | ||||||||    
T  25739155 ttaaaactcttagggagagttttccgcccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacacc 25739252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 15283139 - 15283235
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    ||||||||||||  || ||  ||||| |||||||  |||||||||||||||| ||||||||| |  | |||| | ||||||| ||| ||||||||||    
T  15283139 ttaaaactcttatggaaagattgccgcccatttgggtcccacaatgctcgagagattagtcttcataattgcccacggaggagacccgatttacacc 15283235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29059862 - 29059969
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||| |     
T  29059862 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccgg 29059961  T
Q  101 tttacacc 108  Q
    ||||||||    
T  29059962 tttacacc 29059969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31492160 - 31492267
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  31492160 atgcagcagtgttaaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgg 31492259  T
Q  101 tttacacc 108  Q
    ||||||||    
T  31492260 tttacacc 31492267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 37339803 - 37339714
Alignment:
Q  15 aaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    |||||||||| |||||||||||| | |||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  37339803 aaactcttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgattta 37339714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19477333 - 19477229
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||| |||||||||||||||||| |||||  ||||| |||||||  |||||||||||| |||||||||||||||||||||  |||||||||||| |||     
T  19477333 atgcaacagtgttaaaactcttagggagagcttgccggccatttgggtcccacaatgct-gagggattagtctccgcagtt--gcgcggaggatagctgg 19477237  T
Q  101 tttacacc 108  Q
    ||||||||    
T  19477236 tttacacc 19477229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 21747124 - 21747021
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||| |||| |||||||||||||| ||||| || ||  |||||||  ||||||||| |||||||||||||||| |||||||| ||||||||||||||||     
T  21747124 atgctgcagcgttaaaactcttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctgg 21747025  T
Q  101 ttta 104  Q
    ||||    
T  21747024 ttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14545000 - 14545070
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagt 71  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||  ||||||||||||||| ||||||||    
T  14545000 atgcagcagtgttaaaactcttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 8839365 - 8839281
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgc 85  Q
    ||||||||| |||||||||||||| |||| ||||||| | ||||  |||||||||| ||||||||||||||||||||| ||||||    
T  8839365 atgcagcagcgttaaaactcttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctccgcaattgcgc 8839281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 20207564 - 20207649
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 96  Q
    |||||||||||||  |||||  |||||  |||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||    
T  20207564 gttaaaactcttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatac 20207649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 28665194 - 28665243
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28665194 tcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacc 28665243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 29428857 - 29428792
Alignment:
Q  20 cttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgc 85  Q
    ||||| |||||| ||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  29428857 cttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcgc 29428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 42741890 - 42741790
Alignment:
Q  3 gcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatt 102  Q
    ||||||||||||||||| |||| ||||  |||||  |||||||  ||| | ||| |||||||||||| |||| |||||||||||||||||||||| ||||    
T  42741890 gcagcagtgttaaaacttttagggagaacctgccacccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacccgatt 42741792  T
Q  103 ta 104  Q
    ||    
T  42741791 ta 42741790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 45778956 - 45779028
Alignment:
Q  36 cgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    ||||| ||||| || |||||| |||||||||||||||||||||||||||   |||||||||||| ||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacacc 45779028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 24172283 - 24172362
Alignment:
Q  18 ctcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||| |||||  ||||| ||| ||| |||||||||||||||| ||||||||||  |||||||||||||||| |||||    
T  24172283 ctcttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 11486820 - 11486722
Alignment:
Q  9 gtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 107  Q
    |||||||||||||||   ||||  ||||| |||||||  | ||||||||||| || ||||||||||  ||||||||||||||||||||| | |||||||    
T  11486820 gtgttaaaactcttaagaagagcttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacac 11486722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 28828845 - 28828751
Alignment:
Q  5 agcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctg 99  Q
    ||||| ||||||||||| ||||||||| |  ||||||||||  || ||||| |||| | |||||||||| ||||||||| |||||||||| ||||    
T  28828845 agcagcgttaaaactctcagagagagtttatcgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggatccctg 28828751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 35707949 - 35707999
Alignment:
Q  47 atcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||| ||||||||||||||||||||||| ||||||||||| ||||||||||    
T  35707949 atcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacc 35707999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 28537457 - 28537539
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||| ||||| |||||| |||||||  |||    ||||| ||||||||||||||||||||||| |||| ||||||||    
T  28537457 gttaaaactcttagggagagcctgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacc 28537539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 31776513 - 31776578
Alignment:
Q  39 ccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    |||||||  ||||||||| |||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggttta 31776578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  52 acaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 105  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| || |||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 13254185 - 13254117
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggatta 69  Q
    ||||||||| ||| |||||||||| ||||| |||||| ||||||   ||||||||||||||||||||||    
T  13254185 atgcagcagcgttgaaactcttagggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 46373740 - 46373837
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagtt--gcgcgcggaggatacctgatttaca 106  Q
    |||||||||| ||| |||||  ||||| | |||||  || ||||||||||||| |||||||||  ||||||  ||||||||| |||||| ||||||||    
T  46373740 gttaaaactcgtagggagagcttgccgcctatttgggtcacacaatgctcgagagattagtcttggcagtttcgcgcgcggaagatacccgatttaca 46373837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 25241198 - 25241105
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 105  Q
    |||||||| |||| |||||| || || |||||| |||| |||||  |||||| ||||||||||| || ||||||||| || ||||  |||||||    
T  25241198 ttaaaacttttagggagagtttgtcgcccatttaaatctcacaagactcgagagattagtctccacatttgcgcgcgaagcatactcgatttac 25241105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 42297523 - 42297429
Alignment:
Q  4 cagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacct 98  Q
    |||||| |||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42297523 cagcagcgttaaaactcttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacct 42297429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 18428225 - 18428120
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  18428225 atgcagcagtgttaaaacttttagggagagtctgctgtccatttggc-cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccga 18428127  T
Q  101 tttacac 107  Q
    |||||||    
T  18428126 tttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28724729 - 28724825
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||| ||||||||||||||||||  |||||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||    
T  28724729 atgcaacagtgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacc 28724825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16756139 - 16756246
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||| || |||||||||||||| |||||  || ||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  16756139 atgcagaagcgttaaaactcttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcga 16756238  T
Q  101 tttacacc 108  Q
    ||||||||    
T  16756239 tttacacc 16756246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 15642526 - 15642617
Alignment:
Q  15 aaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 106  Q
    |||||||||| |||||| ||||| |||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  15642526 aaactcttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttaca 15642617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 36806678 - 36806775
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||| ||| |||||||| |||||||  | ||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||    
T  36806678 gttaaaactcttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacc 36806775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 7242891 - 7242795
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||  |||||||||||||| |||||||| ||  ||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||    
T  7242891 atgcagcaacgttaaaactcttagggagagtctacctcccatttgaatctcataatactcgagggattagtctccgcagttgcgcgcggaagatacc 7242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9781073 - 9780977
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||| |||||||||||||| ||||||| |||| |||||||  |||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781073 atgcagcagcgttaaaactcttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25655348 - 25655241
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||||||  ||||||||||||||||||||| |||||||||||| |||| |||||||||  || |||||||||| ||||||| || | || ||||||| |    
T  25655348 atgcagcaacgttaaaactcttagagagagtttgccgtccatttaaatcacacaatgctaaagagattagtctctgcagttgtgcacagaagatacctaa 25655249  T
Q  101 tttacacc 108  Q
    ||||||||    
T  25655248 tttacacc 25655241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 12035620 - 12035713
Alignment:
Q  14 aaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 107  Q
    ||||||||||| |||||||||||| |||||||  ||||||||||||||||||||||||||| ||| |||| || ||| |||||  |||||||||    
T  12035620 aaaactcttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgatttacac 12035713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 46864148 - 46864255
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||| || ||||||| |||||| ||||   |||||||||||||  |  ||||||| |||||||||||||||| ||||||||||||  |||||||||||    
T  46864148 atgcagtagcgttaaaattcttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctga 46864247  T
Q  101 tttacacc 108  Q
    ||||||||    
T  46864248 tttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 49071664 - 49071741
Alignment:
Q  31 tctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||||||||||| ||||| |||| | ||||||||||    
T  49071664 tctgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacacc 49071741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 44913180 - 44913272
Alignment:
Q  15 aaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 107  Q
    |||||||||| |||||  ||||| |||| ||  |||||||||||||||| |||||||||| |||||| ||||| |||||||||| ||||||||    
T  44913180 aaactcttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacac 44913272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36522320 - 36522259
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcga 62  Q
    ||||||||  |||||||||||||| |||||| |||||||||||||| |||||||||||||||    
T  36522320 atgcagcaaggttaaaactcttagggagagtttgccgtccatttgagtcccacaatgctcga 36522259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 39547448 - 39547355
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggat 94  Q
    |||||||||||| ||||||||||| | |||||||||| | ||||   || ||||||| |||| |||||| ||||||||||||||||| ||||||    
T  39547448 atgcagcagtgtcaaaactcttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggat 39547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 22022177 - 22022273
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||  ||||||||||||| ||||   ||||  |||||||  |||||||||  ||||||||||||||||||||||||| || ||||||||||    
T  22022177 atgcagcagcattaaaactcttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacc 22022273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 32534150 - 32534244
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 106  Q
    ||||||||||||||||||||  | ||| ||||| |  || ||||||||||||| | |||||||||||| |||||||| ||||||||||| ||||||    
T  32534150 gttaaaactcttagagagagcttaccgcccattagg-tctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 10750686 - 10750756
Alignment:
Q  33 tgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattt 103  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||   ||||||||||| |||||||||||||||    
T  10750686 tgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacctgattt 10750756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24801438 - 24801512
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctcc 75  Q
    |||||||| ||||||||||||||| |||||| | |||||||||||| ||||||||  ||| || |||||||||||    
T  24801438 atgcagcactgttaaaactcttagggagagtttaccgtccatttgagtcccacaagactcaagagattagtctcc 24801512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 10367575 - 10367664
Alignment:
Q  15 aaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    |||||||||  |||||||| ||| |||||||  ||| ||||||||||| |||||| |||||||||||||| ||| || ||||| ||||||    
T  10367575 aaactcttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcgaagaatacccgattta 10367664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6218641 - 6218538
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc--gcgcggaggatacct 98  Q
    |||||||| ||||||||||||| || ||| | | || ||||||||| || ||||| ||||||| ||||| ||||| |||||||  ||||| |||||||||    
T  6218641 atgcagcaatgttaaaactcttggatagaattttccatccatttgagtctcacaaggctcgagagattaatctccacagttgcatgcgcgaaggatacct 6218542  T
Q  99 gatt 102  Q
    ||||    
T  6218541 gatt 6218538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 6607728 - 6607669
Alignment:
Q  51 cacaatgctcgagggattagtctccgcagttgcgcgcg--gaggatacctgatttacacc 108  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||||||| |||||||||||    
T  6607728 cacaatgctcgagggattagtctccgcagctgcacgcgtagaggatacttgatttacacc 6607669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 33721007 - 33721079
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    |||||| ||||||| |||||| ||||||||||||| ||||||||| | ||||| ||||||||| |||| ||||    
T  33721007 gttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtcttcgcaattgc 33721079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 32883622 - 32883561
Alignment:
Q  10 tgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagt 71  Q
    ||||||||||||||| |||||| ||||| ||||||| | |||||||  ||||||||||||||    
T  32883622 tgttaaaactcttagggagagtttgccgcccatttggaccccacaagactcgagggattagt 32883561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28286509 - 28286442
Alignment:
Q  9 gtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccg 76  Q
    ||||||||| | |||| |||||||||||| |||||| ||||||||||| | ||| | |||||||||||    
T  28286509 gtgttaaaatttttagggagagtctgccgcccatttaaatcccacaatacccgatgaattagtctccg 28286442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 34946462 - 34946529
Alignment:
Q  27 agagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgc-agttgcgcgcggagga 93  Q
    ||||| |||||||||||| ||||||||||  ||||||  |||||||||||| ||||||| ||||||||    
T  34946462 agagtttgccgtccatttaaatcccacaagactcgagaaattagtctccgcaagttgcgagcggagga 34946529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 45806293 - 45806400
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||| ||||||||||||| |||||  | ||| | |||| | || ||||||  ||||  |||||||||| |||||| |||| ||||||||| ||     
T  45806293 atgcagcagttttaaaactcttagggagagcataccgcctatttaagtctcacaatattcgaatgattagtctctgcagttacgcgtggaggatacatgg 45806392  T
Q  101 tttacacc 108  Q
    ||||||||    
T  45806393 tttacacc 45806400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 11530664 - 11530714
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcga 62  Q
    ||||||||||||  |||||| |||||||||||||| | |||||||||||||    
T  11530664 ttaaaactcttaaggagagtttgccgtccatttgagttccacaatgctcga 11530714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26388 - 26495
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||| |     
T  26388 atgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccgg 26487  T
Q  101 tttacacc 108  Q
    ||||||||    
T  26488 tttacacc 26495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31579313 - 31579208
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    ||||| ||||||||||||| |||| |||||||||||| |||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||| |     
T  31579313 atgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccgg 31579214  T
Q  101 tttaca 106  Q
    ||||||    
T  31579213 tttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 5394454 - 5394560
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||| ||||||||||||||| ||||| |||||| |||||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||  ||    
T  5394454 atgcagca-tgttaaaactcttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcga 5394552  T
Q  101 tttacacc 108  Q
    ||||||||    
T  5394553 tttacacc 5394560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 37180068 - 37179978
Alignment:
Q  18 ctcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    ||||||| |||||| ||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  37180068 ctcttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacacc 37179978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 42745200 - 42745095
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||| ||||||||||||||| |||||||||| | | |||||  | |||||||| |||||||||||||||| |||||||||||||||||||||| |     
T  42745200 atgcagcaatgttaaaactcttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccgg 42745101  T
Q  101 tttaca 106  Q
    ||||||    
T  42745100 tttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 9438220 - 9438126
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||||||| ||||||||||||||  |||  |||||| |||||||  |||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  9438220 atgcagcagggttaaaactcttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 17981566 - 17981650
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||||||| |||||  ||||| | |||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17981566 ttaaaactcttagggagagcttgccg-caatttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacc 17981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 25423832 - 25423904
Alignment:
Q  32 ctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    |||||| |||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||    
T  25423832 ctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacccgattta 25423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 108
Target Start/End: Complemental strand, 37092247 - 37092172
Alignment:
Q  33 tgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||||||| || ||||||||||| | ||||||||    
T  37092247 tgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacacc 37092172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 12233146 - 12233056
Alignment:
Q  14 aaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    |||||||||||||||||| ||||| |||||| | |  ||||||||||||||||||||||||| ||||| |||  ||||||||| |||||||    
T  12233146 aaaactcttagagagagtttgccgcccatttaagtttcacaatgctcgagggattagtctccacagttacgcttggaggatacttgattta 12233056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 18105436 - 18105353
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||||| |||||  ||||| |||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||    
T  18105436 gttaaaattcttatggagagcctgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggata 18105353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 14551557 - 14551626
Alignment:
Q  27 agagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 96  Q
    ||||||||||| | |||||  ||| |||||||||||||||||| ||||||||||||||||| ||||||||    
T  14551557 agagtctgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatac 14551626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 17655756 - 17655824
Alignment:
Q  39 ccatttgaatcccacaatgctcgagggattagtctccgcagttgc--gcgcggaggatacctgatttac 105  Q
    ||||||| || |||||| |||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttac 17655824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14121966 - 14121894
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtct 73  Q
    ||||||||  ||||||| |||||||||||   ||||| |||||||| ||||||||||||||||||||||||||    
T  14121966 atgcagcaacgttaaaattcttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 17183784 - 17183733
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcga 62  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  17183784 gttaaaactcttagagagagtttgctgtccatttgaattccacaatgctcga 17183733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 38464046 - 38464115
Alignment:
Q  35 ccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgattta 104  Q
    ||||| |||||| ||||||||| |||||| |||||||||  ||| ||||||| |||||||||||||||||    
T  38464046 ccgtctatttgagtcccacaatactcgagtgattagtctttgcaattgcgcgtggaggatacctgattta 38464115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 7020443 - 7020352
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggagga 93  Q
    |||||||| |||||||| |||||| ||||   ||||| |||||||  ||| |||||||||||| ||||||||||  |||||||||||||||||    
T  7020443 atgcagcaatgttaaaa-tcttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 32643047 - 32642959
Alignment:
Q  21 ttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccg-cagttgcgcgcggaggatacctgatttacacc 108  Q
    |||| |||||| ||| || ||||||||||||||||  |||||| |||||||||| |  |||||| ||||||||||||| ||||||||||    
T  32643047 ttagggagagtttgctgttcatttgaatcccacaagactcgagagattagtctctgtaagttgcacgcggaggatacccgatttacacc 32642959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 26296441 - 26296503
Alignment:
Q  26 gagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcg 88  Q
    |||||| ||||| ||| ||||||||||||| ||||||| ||||||||||| ||||||| ||||    
T  26296441 gagagtttgccgcccaattgaatcccacaaggctcgagagattagtctccacagttgcacgcg 26296503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 38743795 - 38743879
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgc 85  Q
    ||||||||  ||||||||| || | |||||  |||||  |||||| ||| |||||||||  ||||||||||||||||||||||||    
T  38743795 atgcagcaacgttaaaacttttggggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcgc 38743879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  39 ccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    ||||||||||||||||||  |||| |||||| |||||||||||| || |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 1682136 - 1682175
Alignment:
Q  58 ctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  1682136 ctcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 38373031 - 38372973
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 106  Q
    ||||||||||||| ||| ||||||||   ||||||||||||||||||||| ||| ||||    
T  38373031 tcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacccgatataca 38372973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 993822 - 993915
Alignment:
Q  13 taaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttaca 106  Q
    |||||||||||| ||||   ||||| |||||||  ||| ||||| ||  | |||||||| ||||| |||||||| ||||||||||||| |||||    
T  993822 taaaactcttagggagaacttgccgcccatttgggtcctacaatactgaatggattagtttccgccgttgcgcgtggaggatacctgacttaca 993915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44732657 - 44732616
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccat 42  Q
    |||||||||||||||||||||||| ||||| |||||| ||||    
T  44732657 atgcagcagtgttaaaactcttagggagagcctgccgcccat 44732616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12133314 - 12133270
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttg 45  Q
    ||||||||  |||||||||||||| ||||| ||||||||||||||    
T  12133314 atgcagcaacgttaaaactcttagggagagcctgccgtccatttg 12133270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 13835509 - 13835445
Alignment:
Q  33 tgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||| ||||||| |||||||||| | ||||||||||| || ||||||| | | ||||||||||    
T  13835509 tgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 24412971 - 24412915
Alignment:
Q  41 atttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||| ||||||||| || |||| |||||||||||||||| |||  ||||||||||    
T  24412971 atttgagtcccacaatacttgaggaattagtctccgcagttccgctaggaggatacc 24412915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 33757104 - 33757132
Alignment:
Q  80 ttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||||||||||||||||||    
T  33757104 ttgcgcgcggaggatacctgatttacacc 33757132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12411205 - 12411301
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||| ||||||||||||||  ||||||||||| |||||| | |||||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  12411205 atgcagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacc 12411301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 28099300 - 28099396
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||||||||||||| |||| |||| | || ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  28099300 atgcagcagtgttaaaacttttagggagaatttgtcgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 31412180 - 31412282
Alignment:
Q  2 tgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgat 101  Q
    ||||||||||||||||||||||| |||||||||||| |||||||  | ||||||||||||||  |||||||||| ||||||||| ||||||||| | |||    
T  31412180 tgcagcagtgttaaaactcttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgat 31412279  T
Q  102 tta 104  Q
    |||    
T  31412280 tta 31412282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 21910272 - 21910368
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacacc 108  Q
    |||||||||||||||||||||||||||  |||||   ||||||||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||    
T  21910272 gttaaaactcttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacc 21910368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 12836981 - 12836885
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||| |||||||||||||| |||||   |||| |||||||  |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  12836981 atgcagcagcgttaaaactcttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacc 12836885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 423712 - 423782
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagt 71  Q
    |||| |||| ||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||||    
T  423712 atgctgcagcgttaaaactcttagagataaactgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 9536844 - 9536918
Alignment:
Q  21 ttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 95  Q
    |||| ||||| || ||||||||||  || |||||||||||||||||||||||||||||||||||| |||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 3660731 - 3660650
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    ||||||||||||||||||||||||||||||| || ||  ||||||||| |||||| ||| || ||| ||||||||||||||||    
T  3660731 atgcagcagtgttaaaactcttagagagagtttgtcgctcatttgaattccacaaagcttgatgga-tagtctccgcagttgc 3660650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 27735542 - 27735621
Alignment:
Q  9 gtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcg 88  Q
    ||||||||||||||||||| ||| |  |||||||||||||||||||||| |||| |||||||||  |  |||||||||||    
T  27735542 gtgttaaaactcttagagaaagtttttcgtccatttgaatcccacaatgttcgaaggattagtcatcatagttgcgcgcg 27735621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21028924 - 21028845
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttg 82  Q
    ||||||||| ||||||||||||||||||  | ||||| |||||||  | |||||| |||| |||||||||||||||||||||    
T  21028924 atgcagcagcgttaaaactcttagagag--tttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21029061 - 21028982
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttg 82  Q
    ||||||||| ||||||||||||||||||  | ||||| |||||||  | |||||| |||| |||||||||||||||||||||    
T  21029061 atgcagcagcgttaaaactcttagagag--tttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttg 21028982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31107577 - 31107479
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctg 99  Q
    ||||| ||| |||||||||||| | |||||  | |||||||||||| |||||||||  ||||| |||||||||| | | |||||||| |||||||||||    
T  31107577 atgcaacagcgttaaaactctttgggagagcttaccgtccatttgattcccacaatattcgagagattagtctctgtaattgcgcgcagaggatacctg 31107479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 28933205 - 28933277
Alignment:
Q  11 gttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgc 83  Q
    ||||||| ||||||||||||| ||||| |||||||  | |||||||||||||| || |||| |||||||||||    
T  28933205 gttaaaattcttagagagagtttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttgc 28933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 1534320 - 1534394
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcg 86  Q
    ||||||||||||| |||||  || || |||||||| || |||||||||||||| |||  ||||||||||||||||    
T  1534320 ttaaaactcttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagttgcgcg 1534394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 278459 - 278552
Alignment:
Q  12 ttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttac 105  Q
    ||||||||||||  |||||| ||||||||||||   ||||||||  ||| |||||||||||  | ||||||| | ||||||||||| |||||||    
T  278459 ttaaaactcttatggagagtttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttac 278552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 25084091 - 25084196
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctga 100  Q
    |||||||| ||||||||||||||| |||||  || | ||||||| | | |||||||||||||| |||||||||  ||||||  ||||  | |||||| ||    
T  25084091 atgcagcaatgttaaaactcttagggagagcttgtcatccatttaagttccacaatgctcgagagattagtctatgcagttatgcgcataagatacccga 25084190  T
Q  101 tttaca 106  Q
    ||||||    
T  25084191 tttaca 25084196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 17177195 - 17177290
Alignment:
Q  1 atgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatac 96  Q
    |||||||||  ||||||||||||  || ||| | | ||| ||||| ||| |||||| |||||||||||| |||||| | ||| |||||||||||||    
T  17177195 atgcagcagctttaaaactcttaaggaaagttttctgtctatttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 15614617 - 15614561
Alignment:
Q  41 atttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    |||||| ||||||||||||| ||| |||||||| | |||||||| | ||||||||||    
T  15614617 atttgagtcccacaatgctctaggaattagtcttcacagttgcgtgtggaggatacc 15614561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 97
Target Start/End: Complemental strand, 27296 - 27213
Alignment:
Q  14 aaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 97  Q
    ||||||||||| |||||  ||||| ||||||| ||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  27296 aaaactcttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 29189 - 29130
Alignment:
Q  48 tcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctgatttacac 107  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||    
T  29189 tcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacac 29130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 16138 - 16065
Alignment:
Q  2 tgcagcagtgttaaaactcttagagagagtctgccgtccatttgaatcccacaatgctcgagggattagtctcc 75  Q
    |||||||||||||| | || ||  |||||| |||||||||||||  || |||||||||||| ||||||||||||    
T  16138 tgcagcagtgttaatattcgtatggagagtttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University