View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_low_19 (Length: 271)
Name: NF2917_low_19
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 41445329 - 41445090
Alignment:
| Q |
20 |
cagcattatggctcaataacaacacattgaaagggacaactcctcatattccatagagtatatgtttttgtgcaacatgttacaaggaaatattccagaa |
119 |
Q |
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| T |
41445329 |
cagcattatggctcaataacaacacattgaaagggacaactcctcatattccttagagtatatgtttttgtgcaacatgttacaaggaaatattccagaa |
41445230 |
T |
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| Q |
120 |
acacttttctaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtcaattttaaactcttctcgaagttccaaaatctgg |
219 |
Q |
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| T |
41445229 |
a-acttttctaccttgtaaaccttactaacttgtgtctatcttcaaataacttgagtggttttgtcaattttaaactcttctcgaagttccaaaatctgg |
41445131 |
T |
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| Q |
220 |
aaagtctttccctttctcagaatagtcgattatcagtgaac |
260 |
Q |
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| T |
41445130 |
aaagtctttccctttctcagaatagtcgattatcagtgaac |
41445090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 59 - 256
Target Start/End: Complemental strand, 41432483 - 41432283
Alignment:
| Q |
59 |
ctcctcatattccatagagtatatgtttttgtgcaaca---tgttacaaggaaatattccagaaacacttttctaccttgtaaaccttactaacttgtgt |
155 |
Q |
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| T |
41432483 |
ctcctcacattccttagagtatatgtttttgtgcaacaacatgttacaaggaaatattccagaatcacttttcaaccttgtaaaccttactaacttgtgt |
41432384 |
T |
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| Q |
156 |
ctatcttcaaataacttgagtggttttgtcaattttaaactcttctcgaagttccaaaatctggaaagtctttccctttctcagaatagtcgattatcag |
255 |
Q |
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| T |
41432383 |
ctatcttcaaataacttgagtggttttgtcaattttaaactcttttcgaagttccaaaatctggaaagtctttccctttctcagaatagtcaattatcag |
41432284 |
T |
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| Q |
256 |
t |
256 |
Q |
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| T |
41432283 |
t |
41432283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 41432607 - 41432564
Alignment:
| Q |
20 |
cagcattatggctcaataacaacacattgaaagggacaactcct |
63 |
Q |
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| T |
41432607 |
cagcattatggctcaataacaacacactgaaagggacaattcct |
41432564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 11118985 - 11118938
Alignment:
| Q |
155 |
tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc |
202 |
Q |
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| T |
11118985 |
tctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctc |
11118938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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