View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2917_low_23 (Length: 251)

Name: NF2917_low_23
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2917_low_23
NF2917_low_23
[»] chr5 (1 HSPs)
chr5 (12-251)||(5006627-5006862)
[»] chr7 (4 HSPs)
chr7 (55-166)||(46383476-46383584)
chr7 (91-167)||(36777898-36777974)
chr7 (55-167)||(24912084-24912192)
chr7 (91-131)||(4225730-4225770)
[»] chr1 (1 HSPs)
chr1 (74-167)||(47377626-47377718)
[»] chr3 (2 HSPs)
chr3 (117-167)||(42913312-42913362)
chr3 (106-164)||(46103765-46103823)
[»] chr4 (1 HSPs)
chr4 (130-166)||(31350315-31350351)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 5006862 - 5006627
Alignment:
Q  12 atgaagtgttggagaaagttgatggnnnnnnnngtcttaaatcaacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaa 111  Q
    |||||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5006862 atgaagtgttggagaaagttgacggtttattttgtcttaaatcaacaattgttagagttataataaatagacatagaccaataaaatttgctcaaataaa 5006763  T
Q  112 actactaaaactgttattttgaaataaatagtatagtctttaatttcattgagcaannnnnnnnngattactttattgttttagccacaccaaaaattaa 211  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  5006762 actactaaaactgttattttgaaataaatag--tagtctttaatttcattgagcaatttttttt--attactttattgttttagccacaccaaaaattaa 5006667  T
Q  212 tcatggatccgcctaaaaccctcacacctctgctctttat 251  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  5006666 tcatgggtccacctaaaaccctcacacctctgctctttat 5006627  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 46383584 - 46383476
Alignment:
Q  55 aacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaa 154  Q
    |||||||||||| |||||||   ||||||||| || | ||||||||||  ||||||||  ||||||||||||||||| ||| |||||||| | |||||||    
T  46383584 aacaattgttagggttataa---atagacataaactagtaaaatttgcccaaataaaataactaaaactgttattttaaaagaaatagtacaatctttaa 46383488  T
Q  155 tttcattgagca 166  Q
    ||||||||||||    
T  46383487 tttcattgagca 46383476  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 36777898 - 36777974
Alignment:
Q  91 aataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 167  Q
    ||||||||||||| ||| ||||||||||||||| || |||| ||  |||||||||||||||||||||||||||||||    
T  36777898 aataaaatttgctcaaacaaaactactaaaactattgttttcaatgaaatagtatagtctttaatttcattgagcaa 36777974  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 24912192 - 24912084
Alignment:
Q  55 aacaattgttagagttataataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaa 154  Q
    |||||||||||| |||||||||    |||||| || |||||  |||||  |||||||| |||||||| |||||||||||   |||||||||||| |||||    
T  24912192 aacaattgttagggttataata----gacatacactaataatttttgcccaaataaaattactaaaaatgttattttgattgaaatagtatagtttttaa 24912097  T
Q  155 tttcattgagcaa 167  Q
    |||||||||||||    
T  24912096 tttcattgagcaa 24912084  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 4225730 - 4225770
Alignment:
Q  91 aataaaatttgctgaaataaaactactaaaactgttatttt 131  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  4225730 aataaaattagctcaaataaaactactaaaactattatttt 4225770  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 47377626 - 47377718
Alignment:
Q  74 ataaatagacatagaccaataaaatttgctgaaataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 167  Q
    ||||||||||||   | ||||||| ||||  |||||||||||||||| |||||||||||||  ||||| ||| ||||||||||| |||||||||    
T  47377626 ataaatagacatgagctaataaaacttgcccaaataaaactactaaa-ctgttattttgaatgaaataatatcgtctttaatttaattgagcaa 47377718  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 42913362 - 42913312
Alignment:
Q  117 taaaactgttattttgaaataaatagtatagtctttaatttcattgagcaa 167  Q
    ||||||||||||||||||  ||||||| |||| ||||||||||||||||||    
T  42913362 taaaactgttattttgaatgaaatagtttagtttttaatttcattgagcaa 42913312  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 46103765 - 46103823
Alignment:
Q  106 aataaaactactaaaactgttattttgaaataaatagtatagtctttaatttcattgag 164  Q
    |||||||||| ||||| || |||||| ||  ||||||||||||||||||||||||||||    
T  46103765 aataaaactattaaaaatgatattttaaatgaaatagtatagtctttaatttcattgag 46103823  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 31350351 - 31350315
Alignment:
Q  130 ttgaaataaatagtatagtctttaatttcattgagca 166  Q
    |||||| |||||||||||| |||||||||||||||||    
T  31350351 ttgaaagaaatagtatagtgtttaatttcattgagca 31350315  T

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