View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_low_29 (Length: 218)
Name: NF2917_low_29
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 39620614 - 39620538
Alignment:
| Q |
21 |
atacgaaagtcgaaaaccgaagtgaggacataaaaagatttaacataaatctagatttagttttatatgcacgtgtt |
97 |
Q |
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| T |
39620614 |
atacgaaagtcgaaaaccgaagtgaggacataaaaagatttaacataaatctagaattagttttatatgcacgtgtt |
39620538 |
T |
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Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 39620484 - 39620432
Alignment:
| Q |
151 |
tgctagggccactcacttacttaccaaccaaccaaaaaatcacggactctgtg |
203 |
Q |
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| T |
39620484 |
tgctagggccactcacttacttaccaaccaaccaaaaaatcacggactctgtg |
39620432 |
T |
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