View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2917_low_30 (Length: 212)

Name: NF2917_low_30
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2917_low_30
NF2917_low_30
[»] chr6 (4 HSPs)
chr6 (1-212)||(17302249-17302460)
chr6 (65-107)||(7086802-7086844)
chr6 (65-115)||(24833243-24833293)
chr6 (67-107)||(9658886-9658926)
[»] chr1 (9 HSPs)
chr1 (45-108)||(12713317-12713380)
chr1 (45-108)||(12717408-12717471)
chr1 (45-108)||(12707863-12707926)
chr1 (65-113)||(14332652-14332700)
chr1 (70-140)||(22881631-22881702)
chr1 (65-120)||(35999332-35999387)
chr1 (67-107)||(15641042-15641082)
chr1 (63-115)||(34298435-34298487)
chr1 (63-107)||(40181878-40181922)
[»] chr7 (6 HSPs)
chr7 (45-107)||(8160423-8160485)
chr7 (66-107)||(27093424-27093465)
chr7 (66-107)||(27184836-27184877)
chr7 (66-115)||(41020495-41020544)
chr7 (65-106)||(1433462-1433503)
chr7 (69-113)||(37870894-37870938)
[»] chr5 (3 HSPs)
chr5 (70-115)||(33178024-33178069)
chr5 (66-108)||(35017043-35017085)
chr5 (85-114)||(6770543-6770572)
[»] chr3 (4 HSPs)
chr3 (59-107)||(11313804-11313852)
chr3 (65-107)||(49505164-49505206)
chr3 (65-106)||(32804550-32804591)
chr3 (70-115)||(55401074-55401119)
[»] chr2 (4 HSPs)
chr2 (65-113)||(2665898-2665946)
chr2 (68-107)||(31018597-31018636)
chr2 (65-115)||(34784992-34785042)
chr2 (68-108)||(25846747-25846787)
[»] chr8 (7 HSPs)
chr8 (68-115)||(15816142-15816189)
chr8 (65-115)||(4786348-4786398)
chr8 (65-107)||(14731719-14731761)
chr8 (66-104)||(38079009-38079047)
chr8 (65-107)||(39954289-39954331)
chr8 (65-106)||(11803267-11803308)
chr8 (63-115)||(3677785-3677837)
[»] chr4 (7 HSPs)
chr4 (68-115)||(12895287-12895334)
chr4 (65-104)||(13134460-13134499)
chr4 (72-115)||(17446070-17446113)
chr4 (57-106)||(903930-903979)
chr4 (70-115)||(27706192-27706237)
chr4 (67-115)||(21539879-21539927)
chr4 (65-113)||(36635325-36635373)
[»] scaffold0020 (1 HSPs)
scaffold0020 (65-107)||(135322-135364)
[»] scaffold0039 (1 HSPs)
scaffold0039 (67-115)||(84985-85033)
[»] scaffold0011 (1 HSPs)
scaffold0011 (70-114)||(17764-17808)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 17302460 - 17302249
Alignment:
Q  1 tatgaagcattgccactccatggattaaacgtgtcacattgtcagacaccgacataatactaatacatataattacacaaaatcatgtgattttcttaaa 100  Q
    |||||||||||||| |||||  ||||||| |||||||||||||||||||||||  || | | | ||||||||||||||||||| ||||||||||||||||    
T  17302460 tatgaagcattgccgctccacagattaaatgtgtcacattgtcagacaccgacccaacaatgacacatataattacacaaaattatgtgattttcttaaa 17302361  T
Q  101 ttattagttgtgtcgttatgt-agtgtcgtgtcgggtgtccctatctgtattcatgcttcctaggtttcctnnnnnnnnnnncgattgagataatgcatt 199  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||| |||||| |||||||||||||||||           ||||||||||||||||||    
T  17302360 ttattagttgtgtccatatgtcagtgtcgtgtcgggtgtccctatccgtattcttgcttcctaggtttcct-aaaaaaaagacgattgagataatgcatt 17302262  T
Q  200 tgaaagaggcaaa 212  Q
    |||||||||||||    
T  17302261 tgaaagaggcaaa 17302249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 7086844 - 7086802
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    |||||||||||||| |||| |||||||||||| ||||||||||    
T  7086844 acatataattacactaaattatgtgattttctcaaattattag 7086802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 24833243 - 24833293
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    |||||||||||||| |||| ||| ||||||||||| |||||||| ||||||    
T  24833243 acatataattacactaaattatgcgattttcttaacttattagtagtgtcg 24833293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 9658926 - 9658886
Alignment:
Q  67 atataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||||  ||| |||||||||||||||||||||||    
T  9658926 atataattacactgaattatgtgattttcttaaattattag 9658886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 12713317 - 12713380
Alignment:
Q  45 gacaccgacataatactaatacatataattacacaaaatcatgtgattttcttaaattattagt 108  Q
    ||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  12713317 gacaccgacataacaccaatacatataattacactaaattatgtgattttcttaaattattagt 12713380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 12717408 - 12717471
Alignment:
Q  45 gacaccgacataatactaatacatataattacacaaaatcatgtgattttcttaaattattagt 108  Q
    ||||||||||||| || ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  12717408 gacaccgacataacaccaatacatataattacactaaattatgtgattttcttaaattattagt 12717471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 12707863 - 12707926
Alignment:
Q  45 gacaccgacataatactaatacatataattacacaaaatcatgtgattttcttaaattattagt 108  Q
    ||||||||||||| || ||||||||||||| ||| |||| || |||||||||||||||||||||    
T  12707863 gacaccgacataacaccaatacatataattgcactaaattatatgattttcttaaattattagt 12707926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 14332652 - 14332700
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgt 113  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||||    
T  14332652 acatataattacactaaattatgtgattttctcaaattattagtggtgt 14332700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 22881631 - 22881702
Alignment:
Q  70 taattacacaaaatcatgtgattttcttaaattattagttgtgtcgttatgt-agtgtcgtgtcgggtgtcc 140  Q
    ||||||||| |||| |||||||||| | ||||||||||||||||||   ||| ||||||||||| |||||||    
T  22881631 taattacactaaattatgtgattttttcaaattattagttgtgtcggcgtgtcagtgtcgtgtccggtgtcc 22881702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 35999332 - 35999387
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgtcgttatg 120  Q
    ||||||||||| || |||| || |||||||||||||||||||||||| ||| ||||    
T  35999332 acatataattatactaaattatatgattttcttaaattattagttgtatcggtatg 35999387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 15641042 - 15641082
Alignment:
Q  67 atataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||| ||||||  |||||||||||||||||||||||||||    
T  15641042 atatagttacactgaatcatgtgattttcttaaattattag 15641082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 34298487 - 34298435
Alignment:
Q  63 atacatataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    |||| |||||||||||  ||| |||||||||||| ||||||||||| ||||||    
T  34298487 atacgtataattacactgaattatgtgattttctcaaattattagtggtgtcg 34298435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 40181922 - 40181878
Alignment:
Q  63 atacatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||||||||  ||| |||||||||||| ||||||||||    
T  40181922 atacatataattacactgaattatgtgattttctcaaattattag 40181878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 8160485 - 8160423
Alignment:
Q  45 gacaccgacataatactaatacatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||  |||| || |||||||||||||| |||| |||| ||||||||||||||||||    
T  8160485 gacaccgacacgataccaacacatataattacactaaattatgtaattttcttaaattattag 8160423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 27093424 - 27093465
Alignment:
Q  66 catataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  27093424 catataattacactaaattatgtgattttcttaaattattag 27093465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 27184877 - 27184836
Alignment:
Q  66 catataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||||| |||| |||||||||||||||||||||||    
T  27184877 catataattacactaaattatgtgattttcttaaattattag 27184836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 41020544 - 41020495
Alignment:
Q  66 catataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||||||| |||| ||||||||||  |||||||||||||||||||    
T  41020544 catataattacactaaattatgtgatttttgtaaattattagttgtgtcg 41020495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 1433503 - 1433462
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattatta 106  Q
    |||||||||||||| |||| |||||||||||| |||||||||    
T  1433503 acatataattacaccaaatgatgtgattttctcaaattatta 1433462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 37870938 - 37870894
Alignment:
Q  69 ataattacacaaaatcatgtgattttcttaaattattagttgtgt 113  Q
    |||||||||| ||||||||||||||||| |||| |||||| ||||    
T  37870938 ataattacacgaaatcatgtgattttctcaaatgattagtagtgt 37870894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 33178069 - 33178024
Alignment:
Q  70 taattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||    
T  33178069 taattacactaaattatgtgatttttttaaattattagttgtgtcg 33178024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 35017085 - 35017043
Alignment:
Q  66 catataattacacaaaatcatgtgattttcttaaattattagt 108  Q
    ||||||||||||| |||| |||||||||||| |||||||||||    
T  35017085 catataattacactaaattatgtgattttctcaaattattagt 35017043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 6770572 - 6770543
Alignment:
Q  85 atgtgattttcttaaattattagttgtgtc 114  Q
    ||||||||||||||||||||||||||||||    
T  6770572 atgtgattttcttaaattattagttgtgtc 6770543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 11313804 - 11313852
Alignment:
Q  59 actaatacatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||| |||||||||||||| |||| |||||||||||| ||||||||||    
T  11313804 actaacacatataattacactaaattatgtgattttctcaaattattag 11313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 49505164 - 49505206
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    |||||||||||||| |||| |||||||||||| ||||||||||    
T  49505164 acatataattacactaaattatgtgattttctcaaattattag 49505206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 32804550 - 32804591
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattatta 106  Q
    |||||||||||||| |||| |||||||||||| |||||||||    
T  32804550 acatataattacactaaattatgtgattttctcaaattatta 32804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 55401119 - 55401074
Alignment:
Q  70 taattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||| |||| |||||||||| | ||||||||||||||||||    
T  55401119 taattacactaaattatgtgattttttcaaattattagttgtgtcg 55401074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 2665898 - 2665946
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgt 113  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||||    
T  2665898 acatataattacactaaattatgtgattttctaaaattattagtggtgt 2665946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 31018636 - 31018597
Alignment:
Q  68 tataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  31018636 tataattacactaaatcatgtgattttctgaaattattag 31018597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 34784992 - 34785042
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    |||||||||||||| |||| |||||||||||| |||  |||||||||||||    
T  34784992 acatataattacactaaattatgtgattttctaaaaaaattagttgtgtcg 34785042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 25846787 - 25846747
Alignment:
Q  68 tataattacacaaaatcatgtgattttcttaaattattagt 108  Q
    |||||||||||  |||||||||||||||| |||||||||||    
T  25846787 tataattacactgaatcatgtgattttctcaaattattagt 25846747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 15816142 - 15816189
Alignment:
Q  68 tataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||||| |||| |||||||||| | ||||||||||||||||||    
T  15816142 tataattacactaaattatgtgattttttcaaattattagttgtgtcg 15816189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 4786348 - 4786398
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||||||||  ||| |||||||||||||||||||||| | ||||||    
T  4786348 acatataattacactgaattatgtgattttcttaaattattaatggtgtcg 4786398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 14731761 - 14731719
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    |||||||||||||| |||| |||||||||||| ||||||||||    
T  14731761 acatataattacactaaattatgtgattttctcaaattattag 14731719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 38079047 - 38079009
Alignment:
Q  66 catataattacacaaaatcatgtgattttcttaaattat 104  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  38079047 catataattacactgaatcatgtgattttcttaaattat 38079009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 39954289 - 39954331
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    |||||||||||||| |||| |||||||||||| ||||||||||    
T  39954289 acatataattacactaaattatgtgattttctcaaattattag 39954331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 11803308 - 11803267
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattatta 106  Q
    ||||||||||||||  ||| ||||||||||||||||||||||    
T  11803308 acatataattacactgaattatgtgattttcttaaattatta 11803267  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 3677837 - 3677785
Alignment:
Q  63 atacatataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||||||||| | ||| |||||||||| | ||||||||| ||||||||    
T  3677837 atacatataattacatagaattatgtgattttttaaaattattaattgtgtcg 3677785  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 12895287 - 12895334
Alignment:
Q  68 tataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    |||||||||||||||| |||||||||| | ||||||||| ||||||||    
T  12895287 tataattacacaaaattatgtgattttttcaaattattatttgtgtcg 12895334  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 13134499 - 13134460
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattat 104  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  13134499 acatataattacactaaattatgtgattttcttaaattat 13134460  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 17446113 - 17446070
Alignment:
Q  72 attacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||    
T  17446113 attacactaaattatgtgattttcttaaattattagtggtgtcg 17446070  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 903979 - 903930
Alignment:
Q  57 atactaatacatataattacacaaaatcatgtgattttcttaaattatta 106  Q
    ||||| ||||||||||||||||  ||| |||||||||||| |||||||||    
T  903979 atactgatacatataattacactgaattatgtgattttctcaaattatta 903930  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 27706192 - 27706237
Alignment:
Q  70 taattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||| |||| |||||||||| ||||||||||| ||||||||    
T  27706192 taattacactaaattatgtgatttttttaaattattaattgtgtcg 27706237  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 21539879 - 21539927
Alignment:
Q  67 atataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    |||||||||||| |||| || ||||||||||||||||||| | ||||||    
T  21539879 atataattacactaaattatatgattttcttaaattattaatggtgtcg 21539927  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 36635373 - 36635325
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattagttgtgt 113  Q
    ||||||||||||||  ||| |||||||||||| ||||||||||| ||||    
T  36635373 acatataattacactgaattatgtgattttctcaaattattagtggtgt 36635325  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 135322 - 135364
Alignment:
Q  65 acatataattacacaaaatcatgtgattttcttaaattattag 107  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||    
T  135322 acatataattacacagaattatgtgattttctcaaattattag 135364  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 84985 - 85033
Alignment:
Q  67 atataattacacaaaatcatgtgattttcttaaattattagttgtgtcg 115  Q
    ||||||||||||| ||| || |||||||||||||||| |||| ||||||    
T  84985 atataattacacataattatatgattttcttaaattagtagtggtgtcg 85033  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 114
Target Start/End: Original strand, 17764 - 17808
Alignment:
Q  70 taattacacaaaatcatgtgattttcttaaattattagttgtgtc 114  Q
    ||||||||| |||| |||||||||| | |||||||||||||||||    
T  17764 taattacactaaattatgtgattttttcaaattattagttgtgtc 17808  T

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