View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_low_4 (Length: 475)
Name: NF2917_low_4
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Complemental strand, 7293420 - 7292975
Alignment:
| Q |
19 |
tgcatttcgtccactgctcttacagtcttcactggctatcaaaggtttatattattatctgaaaaaattatattgtgtttcttgtatatttacacatgct |
118 |
Q |
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| T |
7293420 |
tgcatttcgtccactgctcttacagtcttcactggctatcaaaggtttatattattatctgaaaaaattatattgtgtttcttgtatatttacacatgct |
7293321 |
T |
|
| Q |
119 |
cttgcttaattgatatccctggaaacaccttgtttctctaagaaaattataatatgatataatatgtccggaaaatgttcgatagagtttgtagagtttc |
218 |
Q |
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| T |
7293320 |
cttgcttaattgatatccctggaaacaccttgtttctctaagaaaattataatatgatataatatgtcctgaaaatgttcgatagagtttgtagagtttc |
7293221 |
T |
|
| Q |
219 |
ccctcaatcgttttttatcaacacttctagatataaattattgtcctaagttgtttttggcttatgcataattttcatattgtcattttccatttgattg |
318 |
Q |
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| T |
7293220 |
ccctcaatcgttttttatcaacacttctagatataaattattgtcctaagttgtttttcgcttatgcataattttcatattgtcattttccatttgattg |
7293121 |
T |
|
| Q |
319 |
tacacacaaatatacgtagaatcttataaaatacttcttccgaaataaaatataaacaaattaaagcggtggttgaaaaatcaatgcatctggttaaaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7293120 |
tacacacaaatatacgtagaatcttataaaatacttcttctgaaataaaatataaacaaattaaagcggtggttgaaaaatcaatgcatctggttaaaaa |
7293021 |
T |
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| Q |
419 |
tttggctcacaaaaattaactcatcagatgcccttgtttgattcat |
464 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7293020 |
tttggctcacaaaaattaactcatcaggtgcccttgtttgattcat |
7292975 |
T |
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