View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2917_low_5 (Length: 460)
Name: NF2917_low_5
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_low_5 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 12156357 - 12155901
Alignment:
| Q |
1 |
attgaaaggaaaacttataaatgtgcaagctgcttgcaaggaaaagataatgagtaattcaaatattgatagtatccataaatttcttggactgaaattt |
100 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12156357 |
attgaaaggaaaacttctaaatgtccaagctgcttgcaaggaaatgataatgagtaattcacatattgatagtatccataaatttcttggactggaattt |
12156258 |
T |
|
| Q |
101 |
gagaaaaaatattcaagtgtaaattctttatgctattgctaattgatcatcatggctgatcaggtgagagttgggtaagaaattgccatgattgaatata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
12156257 |
gagaaaaaatattcaagtgtaaattctttatgttatggctaattcatcatcatggttgataaggtgagagttgggtaagaaattgccatgaataaatata |
12156158 |
T |
|
| Q |
201 |
ttatttataatttannnnnnnaagcaattgtttataatgctatcaatgnnnnnnnnatcatcaaattatattatctcaacttaatagtaattctgtgaga |
300 |
Q |
| |
|
|| ||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
12156157 |
ttgtttataatttatttttttaaggaattgtttataatgctatcaatg-tttttttatcatcaaattatattatctcaacttaatagtaattatgtggga |
12156059 |
T |
|
| Q |
301 |
cacaatatcatgatggctcccacattaaagggctattaacaaacttgatttataaatgttggccaacactgttgttgttgaaagagccacaacctttcgt |
400 |
Q |
| |
|
|||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
12156058 |
cacaatatcatgattactgccacatcaaagggctattaacaaacttgatttataaatgttggtcagcactgttgatgttgaaagagccacaacctttcgt |
12155959 |
T |
|
| Q |
401 |
ggctatgtttgtaactccgatagttaaggtaagtagggttaattttgtatttgttttgat |
460 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| ||||||||||||| |||||| |
|
|
| T |
12155958 |
ggctatgtttttaactccgatagttaaggtaa--cgggtcaattttgtatttgatttgat |
12155901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 259 - 460
Target Start/End: Original strand, 43860413 - 43860614
Alignment:
| Q |
259 |
catcaaattatattatctcaacttaatagtaattctgtgagacacaatatcatgatggctcccacattaaagggctattaacaaacttgatttataaatg |
358 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||| ||||| |||||||||||| |||||| ||| ||||| ||| |||||||||||||||||| |
|
|
| T |
43860413 |
catcaaattatactatctcaacttattagtaatcatgtggtgcacaagatcatgatggctgccacatcaaatggctactaataaacttgatttataaatg |
43860512 |
T |
|
| Q |
359 |
ttggccaacactgttgttgttgaaagagccacaacctttcgtggctatgtttgtaactccgatagttaaggtaagtagggttaattttgtatttgttttg |
458 |
Q |
| |
|
|||| || || | || |||||||||| || ||||||||| | ||| |||||| ||||| ||| ||| ||||||| ||||||||||||||||| |||| |
|
|
| T |
43860513 |
ttggtcatcattactgatgttgaaagacccgcaacctttcatagctgagtttgtcactccaataattagagtaagtatggttaattttgtatttgatttg |
43860612 |
T |
|
| Q |
459 |
at |
460 |
Q |
| |
|
|| |
|
|
| T |
43860613 |
at |
43860614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 43860112 - 43860225
Alignment:
| Q |
84 |
ttcttggactgaaatttgagaaaaaatattcaagtgtaaattctttatgctattgctaattgatcatcatggctgatcaggtgagagttgggtaagaaat |
183 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||||| | ||| || ||||||| |||| ||||||||||||||||| |||||| | |
|
|
| T |
43860112 |
ttcttggactgaaatttgagaaaaagtattcaagtgtagattctttaagatatggccaattgatgatca-----gatcaggtgagagttggataagaatt |
43860206 |
T |
|
| Q |
184 |
tgccatgattgaatatatt |
202 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
43860207 |
tgccataattgaatatatt |
43860225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University