View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2917_low_6 (Length: 444)
Name: NF2917_low_6
Description: NF2917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2917_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 3289275 - 3289697
Alignment:
| Q |
1 |
tctttacccacttgggctgttcatgtctccagcgtcgttgaatggtattaacttcacttttatcttatcccttctatctagtattttaatcttcattttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3289275 |
tctttacccacttgggctgttcatgtctccagcgtcgttgaatggtattaacttcacttttatcttatcccttctatctactattttaatcttcattttt |
3289374 |
T |
|
| Q |
101 |
gtgnnnnnnnnnattgnnnnnnnnnnnnggattattgctatggctttggtgtggcaatatggggagaaatctgggtatgaagcttggaagggtctttctt |
200 |
Q |
| |
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||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3289375 |
gtgttttttt--attgaaaaataaaaaaggattattgctatggctttggtgtggcaatatggagagaaatctgggtatgaagcttggaagggtctttctt |
3289472 |
T |
|
| Q |
201 |
gggggatggtaagtcttttcattttaattcttttnnnnnnnn-ttattattattattttggcacaaaataagataacaaattcagtgattaacgtagttg |
299 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
3289473 |
gggggatggtaagtcttttaattttaattctttaaaaaaaaaattattattattattttgacacaaaataagataacaaattgagtgattaacgtagttg |
3289572 |
T |
|
| Q |
300 |
aggtagttcaaattgtttgttgttgcttgaaaacatacatgttggagaagtcccacatttcttataatttttaaggaagaaggagaccaagactatttat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3289573 |
aggtagttcaaattgtttgttgttgcttgaaaacatacatgttggagaagtcccacatttcttataatttttaaggaagaaggagaccaagactatttat |
3289672 |
T |
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| Q |
400 |
ataacactttagactagtatctgac |
424 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3289673 |
ataacactttagactagtatctgac |
3289697 |
T |
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