View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918-Insertion-2 (Length: 512)

Name: NF2918-Insertion-2
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918-Insertion-2
NF2918-Insertion-2
[»] chr2 (5 HSPs)
chr2 (8-504)||(2355998-2356494)
chr2 (256-348)||(23747522-23747614)
chr2 (215-316)||(22722116-22722217)
chr2 (440-504)||(23747696-23747760)
chr2 (86-122)||(43586027-43586063)
[»] chr5 (1 HSPs)
chr5 (86-122)||(30080523-30080559)
[»] chr1 (2 HSPs)
chr1 (86-122)||(24462292-24462328)
chr1 (93-122)||(18946056-18946085)
[»] chr7 (1 HSPs)
chr7 (86-122)||(5937443-5937479)
[»] chr6 (2 HSPs)
chr6 (86-122)||(10031571-10031607)
chr6 (86-122)||(19369818-19369854)
[»] chr4 (1 HSPs)
chr4 (86-122)||(28663493-28663529)


Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Complemental strand, 2356494 - 2355998
Alignment:
Q  8 ttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacgcaacactcacactgatcaaattttgagaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356494 ttgacttcaggcttttagttctaggcatattttagttaagaaatcttttccacggacaccggacacgacgcaacactcacactgatcaaattttgagaaa 2356395  T
Q  108 atgacataattcaattatttcaatgtaattacatgtgtcggnnnnnnntgtaattcaaattttgnnnnnnntgaattgatcttaacttgtttagaatgag 207  Q
    |||||||||||||||||||||||| ||||||||||||||||       ||||||||||||||||       |||||||||||||||||||||||||||||    
T  2356394 atgacataattcaattatttcaatttaattacatgtgtcggaaaaaaatgtaattcaaattttgaaaaaaatgaattgatcttaacttgtttagaatgag 2356295  T
Q  208 gccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356294 gccattattgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctg 2356195  T
Q  308 ctaactcctttcgtcttaagttcgttccaatcgctccggtatgtcatttcctgttttagcctgtttcccttccctgttcgttttaaatattctggttcat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2356194 ctaactcctttcgtcttaagttcgttccaatcgctccggtatgtcatttcctgttttagcctgtttcccttccctgttcattttaaatattctggttcat 2356095  T
Q  408 cgctgaaattttgaggatttttcttgaaggactttattttcaattgtggcggtttatcagtggccttcatttttgtcacaaactgggactccaacaa 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356094 cgctgaaattttgaggatttttcttgaaggactttattttcaattgtggcggtttatcagtggccttcatttttgtcacaaactgggactccaacaa 2355998  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 23747522 - 23747614
Alignment:
Q  256 aaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaactcctttcgtcttaagttcgttccaatcgctccggta 348  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||    
T  23747522 aaagaggatcaacgtccatccttcattgattttatctccactttcctctctgctaattcctttcgacttaatttcgttccaattgctccggta 23747614  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 215 - 316
Target Start/End: Complemental strand, 22722217 - 22722116
Alignment:
Q  215 ttgtagatacaaatggaatctgtttgatgagaaatgcatggaaagaggatcaacatccttccttcattgattttatctccactttcctctctgctaactc 314  Q
    |||||| || ||||||| |||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| || ||||||||||||||||| ||    
T  22722217 ttgtaggtataaatggagtctgtttgatgagaaatgcatggaaagaggatcaacgtccatctttcattgattttatgtcaactttcctctctgctaattc 22722118  T
Q  315 ct 316  Q
    ||    
T  22722117 ct 22722116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 440 - 504
Target Start/End: Original strand, 23747696 - 23747760
Alignment:
Q  440 tttattttcaattgtggcggtttatcagtggccttcatttttgtcacaaactgggactccaacaa 504  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||||    
T  23747696 tttattttcaattgtggcggtttatctgtggccttcatttttgtgacaaactgagactgcaacaa 23747760  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 43586063 - 43586027
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaat 43586027  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 30080559 - 30080523
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30080559 acactgataaaattttgagaaaatgacataattcaat 30080523  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 24462328 - 24462292
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24462328 acactgatcaaattttgaaaaaatgacataattcaat 24462292  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 18946085 - 18946056
Alignment:
Q  93 tcaaattttgagaaaatgacataattcaat 122  Q
    ||||||||||||||||||||||||||||||    
T  18946085 tcaaattttgagaaaatgacataattcaat 18946056  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 5937479 - 5937443
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaat 5937443  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 10031571 - 10031607
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  10031571 acaccgataaaattttgagaaaatgacataattcaat 10031607  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 19369818 - 19369854
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  19369818 acacggataaaattttgagaaaatgacataattcaat 19369854  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 28663493 - 28663529
Alignment:
Q  86 acactgatcaaattttgagaaaatgacataattcaat 122  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  28663493 acacggataaaattttgagaaaatgacataattcaat 28663529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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