View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918-Insertion-3 (Length: 437)
Name: NF2918-Insertion-3
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 188 - 437
Target Start/End: Original strand, 33495176 - 33495425
Alignment:
| Q |
188 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
287 |
Q |
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| T |
33495176 |
tatgcttacaatccaagaacatttttcctgattttctgaagatttgacacgagttggagaagcagctctcattgaatcaatccaagcattaactttactt |
33495275 |
T |
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| Q |
288 |
tcttctaatctcttagtaaaattcttatgagaaaaacccaaaaacccattaatcaaagccatagattctggcacggtagctgcacttggtaacacgacag |
387 |
Q |
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| T |
33495276 |
tcttctaatctcttagtaaaattcttacgagaaaaacccaaaaacccattaatcaaagccatagattctggcacggtagctgcacttggtaacaccacag |
33495375 |
T |
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| Q |
388 |
tagagataagattgttaatacatgacttaaattctggtgttactgcatta |
437 |
Q |
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| T |
33495376 |
tagagataagattgttaatacatgacttaaattctggtgttactgcatta |
33495425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 33494979 - 33495119
Alignment:
| Q |
8 |
aataggtgagagagtaccatcatagtcaagaaaaaacactatctgttttccttttgcactaaacaatatttgatcaaacaatttcagtgctgaaggatga |
107 |
Q |
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| T |
33494979 |
aataggtgagagagtaccatcatagtcaagaaaaaacactatctgttttctttttgcactatacaatatttgatcaaacaatttcagtgctgaagggtga |
33495078 |
T |
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| Q |
108 |
taaagctgcaagcacaaataataagaagtcaactaaaaatt |
148 |
Q |
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| T |
33495079 |
taaagctgcaagcacaaataataagaagtcaactaaaaatt |
33495119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 37980388 - 37980434
Alignment:
| Q |
225 |
gaagatttgacacgagttggagaagcagctctcattgaatcaatcca |
271 |
Q |
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| T |
37980388 |
gaagatttgacatgagttggagaagaagctctcatagaatcaatcca |
37980434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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