View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918-Insertion-4 (Length: 216)

Name: NF2918-Insertion-4
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918-Insertion-4
NF2918-Insertion-4
[»] chr3 (11 HSPs)
chr3 (6-216)||(4469802-4470021)
chr3 (54-93)||(9624650-9624689)
chr3 (54-96)||(7928459-7928501)
chr3 (54-96)||(11313808-11313850)
chr3 (54-96)||(16192758-16192800)
chr3 (54-96)||(32804548-32804590)
chr3 (54-96)||(49505162-49505204)
chr3 (55-96)||(8789558-8789599)
chr3 (54-86)||(11251987-11252019)
chr3 (54-94)||(12704016-12704056)
chr3 (54-86)||(49651804-49651836)
[»] chr5 (11 HSPs)
chr5 (6-97)||(6471896-6471988)
chr5 (56-95)||(24273039-24273078)
chr5 (56-95)||(24389136-24389175)
chr5 (54-96)||(3966512-3966554)
chr5 (54-96)||(9449478-9449520)
chr5 (54-96)||(28588682-28588724)
chr5 (54-96)||(30502396-30502438)
chr5 (54-96)||(30542739-30542781)
chr5 (58-96)||(41091265-41091303)
chr5 (55-96)||(18421849-18421890)
chr5 (54-91)||(30098335-30098372)
[»] chr6 (14 HSPs)
chr6 (50-96)||(9629388-9629434)
chr6 (37-96)||(9025502-9025562)
chr6 (54-96)||(7265601-7265643)
chr6 (54-96)||(9617443-9617485)
chr6 (54-96)||(19040361-19040403)
chr6 (54-96)||(30866152-30866194)
chr6 (57-96)||(7377991-7378030)
chr6 (57-96)||(11591878-11591917)
chr6 (57-96)||(26562701-26562740)
chr6 (54-92)||(5462695-5462733)
chr6 (54-96)||(7086804-7086846)
chr6 (56-94)||(13360382-13360420)
chr6 (34-78)||(403890-403934)
chr6 (54-86)||(31579243-31579275)
[»] chr7 (16 HSPs)
chr7 (11-86)||(2424580-2424655)
chr7 (54-96)||(17851440-17851482)
chr7 (54-96)||(19206059-19206101)
chr7 (54-96)||(20549800-20549842)
chr7 (58-96)||(22602718-22602756)
chr7 (54-96)||(22868051-22868093)
chr7 (54-96)||(32287471-32287513)
chr7 (54-96)||(32308129-32308171)
chr7 (54-96)||(35297680-35297722)
chr7 (55-96)||(5548686-5548727)
chr7 (55-96)||(9482944-9482985)
chr7 (54-95)||(16341505-16341546)
chr7 (56-96)||(17307904-17307944)
chr7 (54-86)||(29787387-29787419)
chr7 (54-86)||(30731046-30731078)
chr7 (54-82)||(45056923-45056951)
[»] scaffold0044 (1 HSPs)
scaffold0044 (50-96)||(53185-53231)
[»] chr8 (19 HSPs)
chr8 (54-96)||(27213556-27213598)
chr8 (54-96)||(31236585-31236627)
chr8 (54-96)||(34897094-34897136)
chr8 (54-98)||(14731721-14731765)
chr8 (54-96)||(3025560-3025602)
chr8 (54-96)||(4786346-4786388)
chr8 (54-96)||(11803268-11803310)
chr8 (54-96)||(11927094-11927136)
chr8 (54-96)||(12606837-12606879)
chr8 (54-96)||(13844604-13844646)
chr8 (54-92)||(14134708-14134746)
chr8 (54-96)||(24362210-24362252)
chr8 (54-95)||(39954288-39954329)
chr8 (54-94)||(4611543-4611583)
chr8 (54-86)||(12985401-12985433)
chr8 (7-86)||(25566802-25566882)
chr8 (54-86)||(29447128-29447160)
chr8 (54-94)||(34201056-34201096)
chr8 (54-86)||(40332200-40332232)
[»] chr4 (10 HSPs)
chr4 (54-96)||(36635333-36635375)
chr4 (54-95)||(22440609-22440650)
chr4 (54-94)||(903931-903971)
chr4 (54-89)||(24613716-24613751)
chr4 (54-96)||(5775366-5775408)
chr4 (54-96)||(40613459-40613501)
chr4 (54-91)||(8423731-8423768)
chr4 (53-94)||(9996848-9996889)
chr4 (55-96)||(18576045-18576086)
chr4 (54-86)||(12077837-12077869)
[»] chr2 (9 HSPs)
chr2 (54-96)||(21616771-21616813)
chr2 (37-96)||(44860311-44860371)
chr2 (54-96)||(5367201-5367243)
chr2 (54-96)||(23718035-23718077)
chr2 (54-96)||(24105707-24105749)
chr2 (54-96)||(35449522-35449564)
chr2 (54-96)||(37411252-37411294)
chr2 (54-86)||(21782836-21782868)
chr2 (54-94)||(28677918-28677958)
[»] chr1 (18 HSPs)
chr1 (54-96)||(1864888-1864930)
chr1 (54-96)||(6427359-6427401)
chr1 (54-96)||(7918219-7918261)
chr1 (37-86)||(18337321-18337370)
chr1 (55-96)||(25098563-25098604)
chr1 (55-96)||(25361896-25361937)
chr1 (34-94)||(40181859-40181920)
chr1 (55-96)||(44482240-44482281)
chr1 (55-95)||(19324572-19324612)
chr1 (54-96)||(9709829-9709871)
chr1 (54-96)||(10233262-10233304)
chr1 (54-96)||(17425101-17425143)
chr1 (54-96)||(36878470-36878512)
chr1 (54-95)||(12443469-12443510)
chr1 (54-91)||(34298445-34298482)
chr1 (54-94)||(14332652-14332692)
chr1 (54-86)||(31015052-31015084)
chr1 (60-96)||(34371728-34371764)
[»] scaffold0123 (1 HSPs)
scaffold0123 (57-96)||(44533-44572)
[»] scaffold0036 (1 HSPs)
scaffold0036 (54-96)||(9755-9797)
[»] scaffold0020 (1 HSPs)
scaffold0020 (54-96)||(135320-135362)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 6 - 216
Target Start/End: Original strand, 4469802 - 4470021
Alignment:
Q  6 cacggatacagacacaaacacctaacaagatacggacattgacacgcc---------aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||         |||||||| |||||||||||||||||| ||||||||||| |||    
T  4469802 cacggatacagacacaaacacctaacaagacacagacattgacacgccaataccgccaataatttaagaaaatcacataattcagtgtaagtatatatgt 4469901  T
Q  97 gtacctgagagagcaaaagctcagcctcagcgaaatttttcttctctaactcaacatcagccgtcttcctcaaagcaagagcatccaaactattatctcc 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4469902 gtacctgagagagcaaaagctcagcctcagcgaaatttttcttctctaactcaacatcagccatcttcctcaaagcaagagcatccaaactattatctcc 4470001  T
Q  197 tccaccaaacagacttacca 216  Q
    ||||||||||||||||||||    
T  4470002 tccaccaaacagacttacca 4470021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 9624650 - 9624689
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatg 93  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  9624650 aataatttgagaaaatcacataattcaatgtaattatatg 9624689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 7928459 - 7928501
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||| |||||||||||||||| ||||| |||||||||    
T  7928459 aataatttgaaaaaatcacataattcagtgtaattatatgtgt 7928501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 11313850 - 11313808
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  11313850 aataatttgagaaaatcacataatttagtgtaattatatgtgt 11313808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 16192800 - 16192758
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||| |||||||||| ||||| |||||||||    
T  16192800 aataatttgagaaaataacataattcagtgtaattatatgtgt 16192758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 32804590 - 32804548
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  32804590 aataatttgagaaaatcacataatttagtgtaattatatgtgt 32804548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 49505204 - 49505162
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  49505204 aataatttgagaaaatcacataatttagtgtaattatatgtgt 49505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 8789599 - 8789558
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  8789599 ataatttgagaaaatcacataattccgtgtaattatatgtgt 8789558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 11251987 - 11252019
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  11251987 aataatttgagaaaatcacataattcagtgtaa 11252019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 12704016 - 12704056
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  12704016 aataatttgagaaaagcacataattcagtgtaattatatgt 12704056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 49651836 - 49651804
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    |||||||||| ||||||||||||||||||||||    
T  49651836 aataatttgaaaaaatcacataattcactgtaa 49651804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 97
Target Start/End: Complemental strand, 6471988 - 6471896
Alignment:
Q  6 cacggatacagacacaaacacctaacaagatacggacattgacacgcc-aataatttgagaaaatcacataattcactgtaagtatatgtgtg 97  Q
    ||||| |||||||||| | |||  ||| || ||||||| ||||||| | ||||||||||||||||||||||||||| ||||| ||||||||||    
T  6471988 cacggttacagacacagaaaccggacatgacacggacactgacacggctaataatttgagaaaatcacataattcagtgtaattatatgtgtg 6471896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 24273078 - 24273039
Alignment:
Q  56 taatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  24273078 taatttgagaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 24389136 - 24389175
Alignment:
Q  56 taatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  24389136 taatttgagaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 3966512 - 3966554
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||| |||||| ||||| |||||||||    
T  3966512 aataatttgagaaaatcacacaattcagtgtaattatatgtgt 3966554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 9449478 - 9449520
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||    
T  9449478 aataatttgagaaaatcacataattcaatgtaactatttgtgt 9449520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 28588724 - 28588682
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||    
T  28588724 aataatttgagaaaatcacataattcagtgtaattataggtgt 28588682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 30502438 - 30502396
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  30502438 aataatttgagaaaatcacttaattcagtgtaattatatgtgt 30502396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 30542781 - 30542739
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  30542781 aataatttgagaaaatcacttaattcagtgtaattatatgtgt 30542739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 41091303 - 41091265
Alignment:
Q  58 atttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  41091303 atttgagaaaatcacataattcagtgtaattatatgtgt 41091265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 18421890 - 18421849
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||| || ||||| |||||||||    
T  18421890 ataatttgagaaaatcacataatccagtgtaattatatgtgt 18421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 30098335 - 30098372
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtata 91  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  30098335 aataatttgagaaaatcacataattcaatgtaattata 30098372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 9629388 - 9629434
Alignment:
Q  50 cgccaataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  9629388 cgccaataatttgagaaaatcacataattcaatgtaattatatgtgt 9629434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 9025562 - 9025502
Alignment:
Q  37 acggacattgacac-gccaataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||| ||||| || ||||||||||||||||||||||||||| ||||| |||||||||    
T  9025562 acggacatggacactgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 9025502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 7265643 - 7265601
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  7265643 aataatttgagaaaatcacataattcagtgtaattatatgtgt 7265601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 9617443 - 9617485
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  9617443 aataatttgagaaaatcacataattcaatgtaattatatgtgt 9617485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 19040361 - 19040403
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  19040361 aataatttgagaaaatcacataattcagtgtaattatatgtgt 19040403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 30866194 - 30866152
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  30866194 aataatttgagaaaatcacataattcaatgtaattatatgtgt 30866152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 7377991 - 7378030
Alignment:
Q  57 aatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  7377991 aatttgagaaaatcacataattcaatgtaattatatgtgt 7378030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 11591917 - 11591878
Alignment:
Q  57 aatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  11591917 aatttgagaaaatcacataattcagtgtaattatatgtgt 11591878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 26562701 - 26562740
Alignment:
Q  57 aatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgt 26562740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 5462695 - 5462733
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatat 92  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  5462695 aataatttgagaaaatcacataattcattgtaattatat 5462733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 7086804 - 7086846
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  7086804 aataatttgagaaaatcacataatttagtgtaattatatgtgt 7086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 13360420 - 13360382
Alignment:
Q  56 taatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  13360420 taatttgagaaaatcacataattcagtgtaattatatgt 13360382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 403934 - 403890
Alignment:
Q  34 gatacggacattgacacgccaataatttgagaaaatcacataatt 78  Q
    |||||||||||||||||   |||||||||| ||||||||||||||    
T  403934 gatacggacattgacacagtaataatttgaaaaaatcacataatt 403890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 31579275 - 31579243
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  31579275 aataatttgagaaaatcacataattcagtgtaa 31579243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 2424580 - 2424655
Alignment:
Q  11 atacagacacaaacacctaacaagatacggacattgacacgccaataatttgagaaaatcacataattcactgtaa 86  Q
    |||||||||||||| ||  ||| || || |||| | |||||| ||||||||||||||||||||||||||| |||||    
T  2424580 atacagacacaaaccccggacacgacacagacactaacacgctaataatttgagaaaatcacataattcagtgtaa 2424655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 17851440 - 17851482
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  17851440 aataattttagaaaatcacataattcagtgtaattatatgtgt 17851482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 19206059 - 19206101
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| | ||| |||||||||    
T  19206059 aataatttgagaaaatcacataattcattataattatatgtgt 19206101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 20549800 - 20549842
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  20549800 aataatttgagaaaatcacgtaattcagtgtaattatatgtgt 20549842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 22602756 - 22602718
Alignment:
Q  58 atttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  22602756 atttgagaaaatcacataattcagtgtaattatatgtgt 22602718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 22868051 - 22868093
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||| |||||||||||||||||||| ||||| |||||||||    
T  22868051 aataatatgagaaaatcacataattcagtgtaattatatgtgt 22868093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 32287513 - 32287471
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||| |||||||||||||||||||| || ||||||||||||    
T  32287513 aataatctgagaaaatcacataattcagtgcaagtatatgtgt 32287471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 32308129 - 32308171
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| | |||||||    
T  32308129 aataatttgagaaaatcacataattcagtgtaattgtatgtgt 32308171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 35297722 - 35297680
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| | ||| |||||||||    
T  35297722 aataatttgagaaaatcacataattcattataattatatgtgt 35297680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 5548686 - 5548727
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||| |||||||| ||||| |||||||||    
T  5548686 ataatttgagaaaatcaaataattcagtgtaattatatgtgt 5548727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 9482944 - 9482985
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||| |||||| ||||| |||||||||    
T  9482944 ataatttgagaaaatcacacaattcagtgtaattatatgtgt 9482985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 16341505 - 16341546
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||| | ||||| ||||||||    
T  16341505 aataatttgagaaaatcacataattaagtgtaattatatgtg 16341546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 17307904 - 17307944
Alignment:
Q  56 taatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||| |||||||||| ||||| |||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgt 17307944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 29787419 - 29787387
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  29787419 aataatttgagaaaatcacataattcagtgtaa 29787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 30731046 - 30731078
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  30731046 aataatttgagaaaatcacataattcagtgtaa 30731078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 45056951 - 45056923
Alignment:
Q  54 aataatttgagaaaatcacataattcact 82  Q
    |||||||||||||||||||||||||||||    
T  45056951 aataatttgagaaaatcacataattcact 45056923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 53185 - 53231
Alignment:
Q  50 cgccaataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  53185 cgccaataatttgagaaaatcacataattcagtgtaattataagtgt 53231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 27213556 - 27213598
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  27213556 aataatttcagaaaatcacataattcactgtaattatatgtgt 27213598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 31236627 - 31236585
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  31236627 aataatttgagaaaatcacataattcaatgtaattatatgtgt 31236585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 34897094 - 34897136
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  34897094 aataatttgagaaaatcacataattcagtgtaattatatgtgt 34897136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 14731721 - 14731765
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgtgt 98  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||    
T  14731721 aataatttgagaaaatcacataatttagtgtaattatatgtgtgt 14731765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 3025560 - 3025602
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||    
T  3025560 aataatttgagaaaatcacataattcagtgtaattataggtgt 3025602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 4786388 - 4786346
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  4786388 aataatttaagaaaatcacataattcagtgtaattatatgtgt 4786346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 11803268 - 11803310
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||| |||||||||||||||||| ||||| |||||||||    
T  11803268 aataatttaagaaaatcacataattcagtgtaattatatgtgt 11803310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 11927136 - 11927094
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||| |||||||||||||||| ||||| |||||||||    
T  11927136 aataatttgataaaatcacataattcagtgtaattatatgtgt 11927094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 12606879 - 12606837
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||| |||||||| ||||| |||||||||    
T  12606879 aataatttgagaaaatcatataattcaatgtaattatatgtgt 12606837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 13844646 - 13844604
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  13844646 aataatttgagaaaatcacataattgagtgtaattatatgtgt 13844604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 14134708 - 14134746
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatat 92  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  14134708 aataatttgagaaaatcacataattcagtgtaattatat 14134746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 24362252 - 24362210
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||| |||||||||||||| ||||| |||||||||    
T  24362252 aataatttgagagaatcacataattcagtgtaattatatgtgt 24362210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 39954329 - 39954288
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||| | ||||| ||||||||    
T  39954329 aataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 4611543 - 4611583
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  4611543 aataatttgagaaaataacataattcagtgtaattatatgt 4611583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 12985401 - 12985433
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  12985401 aataatttgagaaaatcacataattcaatgtaa 12985433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 25566802 - 25566882
Alignment:
Q  7 acggatacagacacaaacacctaacaagatacggacattgacac-gccaataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||| ||||||| |||||  ||| || || |||| |||||| || |||||||||| |||||||||||||||| |||||    
T  25566802 acggatatagacacagacaccggacatgacacagacactgacacagctaataatttgaaaaaatcacataattcagtgtaa 25566882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 29447160 - 29447128
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  29447160 aataatttgagaaaatcacataattcaatgtaa 29447128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 34201096 - 34201056
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    |||||||||||||||| |||||||||| ||||| |||||||    
T  34201096 aataatttgagaaaatgacataattcaatgtaattatatgt 34201056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 40332200 - 40332232
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  40332200 aataatttgagaaaatcacataattcagtgtaa 40332232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 36635333 - 36635375
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  36635333 aataatttgagaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22440650 - 22440609
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  22440650 aataatttgagaaaatcacataattcagtgtaattatatgtg 22440609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 903931 - 903971
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    ||||||||||||||||||||||||||| ||||| |||||||    
T  903931 aataatttgagaaaatcacataattcagtgtaattatatgt 903971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 24613751 - 24613716
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagta 89  Q
    ||||||||||||||||||||||||||| ||||||||    
T  24613751 aataatttgagaaaatcacataattcaatgtaagta 24613716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 5775408 - 5775366
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||| | ||||| |||||||||    
T  5775408 aataatttgagaaaatcacataattaagtgtaattatatgtgt 5775366  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 40613459 - 40613501
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||| |||||||||||||||||||||| ||||| |||||||||    
T  40613459 aatattttgagaaaatcacataattcagtgtaattatatgtgt 40613501  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 8423768 - 8423731
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtata 91  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  8423768 aataatttgagaaaatcacataattcagtgtaattata 8423731  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 9996848 - 9996889
Alignment:
Q  53 caataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    |||||||||||||||||||||||||||| | ||| |||||||    
T  9996848 caataatttgagaaaatcacataattcagtataattatatgt 9996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 18576086 - 18576045
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  18576086 ataatttgagaaaatcacataattcggtgtaattatatgtgt 18576045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 12077837 - 12077869
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  12077837 aataatttgagaaaatcacataattcaatgtaa 12077869  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 21616771 - 21616813
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  21616771 aataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 44860311 - 44860371
Alignment:
Q  37 acggacattgacac-gccaataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||| |||||| || ||||||||||||||||| ||||||||| ||||| |||||||||    
T  44860311 acggacactgacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgt 44860371  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 5367201 - 5367243
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||    
T  5367201 aataatttgaggaaatcacataattcagtgtaattatatgtgt 5367243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 23718035 - 23718077
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  23718035 aataatttgagaaagtcacataattcagtgtaattatatgtgt 23718077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 24105707 - 24105749
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  24105707 aataatttgagaaagtcacataattcagtgtaattatatgtgt 24105749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 35449522 - 35449564
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||| |||||| ||||| |||||||||    
T  35449522 aataatttgagaaaatcacagaattcagtgtaattatatgtgt 35449564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 37411294 - 37411252
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||| | |||||||||    
T  37411294 aataatttgagaaaatcacataattcagtgtgattatatgtgt 37411252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 21782868 - 21782836
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  21782868 aataatttgagaaaatcacataattcagtgtaa 21782836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 28677918 - 28677958
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    |||||||||| |||||||||||||||| ||||| |||||||    
T  28677918 aataatttgaaaaaatcacataattcagtgtaattatatgt 28677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 1864930 - 1864888
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  1864930 aataatttgagaaaatcacataattcagtgtaattatatgtgt 1864888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 6427359 - 6427401
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  6427359 aataatttgagaaaatcacataattcaatgtaattatatgtgt 6427401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 7918261 - 7918219
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  7918261 aataatttgagaaaatcacataattcagtgtaattatatgtgt 7918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 18337321 - 18337370
Alignment:
Q  37 acggacattgacacgccaataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||| |||||    
T  18337321 acggacactgacatgccaataatttgaaaaaatcacataattcagtgtaa 18337370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 25098604 - 25098563
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  25098604 ataatttgagaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 25361896 - 25361937
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgt 25361937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 40181859 - 40181920
Alignment:
Q  34 gatacggacattgacac-gccaataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||||| ||||| |||||||    
T  40181859 gatacggacacagacactgctaataatttgagaaaatcacataattcagtgtaattatatgt 40181920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 44482240 - 44482281
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||||| ||||| |||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgt 44482281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 19324572 - 19324612
Alignment:
Q  55 ataatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  19324572 ataatttgagaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 9709829 - 9709871
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||  ||||| |||||||||    
T  9709829 aataatttgagaaaatcacataattcgttgtaattatatgtgt 9709871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 10233262 - 10233304
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||    
T  10233262 aataaattgagaaaatcacataattcagtgtaattatatgtgt 10233304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 17425143 - 17425101
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||| |||||||||||||||| ||||| |||||||||    
T  17425143 aataatttgataaaatcacataattcaatgtaattatatgtgt 17425101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 36878470 - 36878512
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||| ||||| |||| ||||    
T  36878470 aataatttgagaaaatcacataattcagtgtaattataggtgt 36878512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 12443510 - 12443469
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtg 95  Q
    ||||||||||||||||||||||||||| ||||| | ||||||    
T  12443510 aataatttgagaaaatcacataattcagtgtaattgtatgtg 12443469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 34298445 - 34298482
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtata 91  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  34298445 aataatttgagaaaatcacataattcagtgtaattata 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 14332692 - 14332652
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgt 94  Q
    ||||||||||||||||||||||||| | ||||| |||||||    
T  14332692 aataatttgagaaaatcacataatttagtgtaattatatgt 14332652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 31015052 - 31015084
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaa 86  Q
    ||||||||||||||||||||||||||| |||||    
T  31015052 aataatttgagaaaatcacataattcagtgtaa 31015084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 34371728 - 34371764
Alignment:
Q  60 ttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  34371728 ttgagaaaatcacataattcagtgtaattatatgtgt 34371764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 44572 - 44533
Alignment:
Q  57 aatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  44572 aatttgagaaaatcacataattcagtgtaattatatgtgt 44533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 9797 - 9755
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  9797 aataatttgagaaaatcacttaattcagtgtaattatatgtgt 9755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 135362 - 135320
Alignment:
Q  54 aataatttgagaaaatcacataattcactgtaagtatatgtgt 96  Q
    ||||||||||||||||||||||||||  ||||| |||||||||    
T  135362 aataatttgagaaaatcacataattctgtgtaattatatgtgt 135320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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