View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918-Insertion-5 (Length: 171)
Name: NF2918-Insertion-5
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918-Insertion-5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 2e-81; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 39520340 - 39520496
Alignment:
| Q |
15 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatctttg |
114 |
Q |
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| T |
39520340 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatcttgg |
39520439 |
T |
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| Q |
115 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcac |
171 |
Q |
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| T |
39520440 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcac |
39520496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 3e-74
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 39510074 - 39510238
Alignment:
| Q |
7 |
aactttctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacg |
106 |
Q |
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| T |
39510074 |
aactttctttaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaaggtgtcgatgacg |
39510173 |
T |
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| Q |
107 |
aatctttgacaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggctcac |
171 |
Q |
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| T |
39510174 |
aatctttgacaaaaccattatctcagtctgaaattcaggtagtccttgacctgaccctggctcac |
39510238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 39574976 - 39575131
Alignment:
| Q |
12 |
tctctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatct |
111 |
Q |
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| T |
39574976 |
tctctaagtgtcccattttccatgtactcgtaaacaagtatcatctcacacctttcatcacaatatgcaattaaggaaacaaggtgtatgtgacgaatct |
39575075 |
T |
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| Q |
112 |
ttgacaaaaccattatctcagtctgaaattcaggcagaccttgacctgatcctggc |
167 |
Q |
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| T |
39575076 |
tggacaaaaccattatctcagtttgaaattcatgacgtccttgacctgaacctggc |
39575131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 8e-41
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 39579516 - 39579660
Alignment:
| Q |
16 |
taagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatctttga |
115 |
Q |
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| T |
39579516 |
taagtgtccctttttccatatattcataaacaagtatcatctcatacccttcatcacaatacccaattaaggaaacaaggtgtatgtgacgaatcttgga |
39579615 |
T |
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| Q |
116 |
caaaaccattatctcagtctgaaattcaggcagaccttgacctga |
160 |
Q |
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| T |
39579616 |
caaaaccattatctcagcttcaaattcaggaagtccttgacctga |
39579660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 39543144 - 39543289
Alignment:
| Q |
15 |
ctaagtgtccccttttccatgtactcataaacaagtatcatctcatacctttcatcacaatacccaattaaggaaacaagatgccgatgacgaatctttg |
114 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||||||| | |
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| T |
39543144 |
ctaagtgtaccattttccatgtactcataaacaagtatcatctcacacctttcatcacaataccctattaaggaaacaaggtgtttgtgacgaatcttgg |
39543243 |
T |
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| Q |
115 |
acaaaaccattatctcagtctgaaattcaggcagaccttgacctga |
160 |
Q |
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| T |
39543244 |
acagaaccattatctcagtttgaaattcatgttgtccttgacctga |
39543289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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