View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918-Insertion-6 (Length: 142)

Name: NF2918-Insertion-6
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918-Insertion-6
NF2918-Insertion-6
[»] chr5 (12 HSPs)
chr5 (8-139)||(39879701-39879832)
chr5 (8-80)||(38987651-38987723)
chr5 (8-80)||(39726364-39726436)
chr5 (8-79)||(40418230-40418301)
chr5 (8-79)||(39168793-39168864)
chr5 (20-79)||(3299480-3299539)
chr5 (20-79)||(3392373-3392432)
chr5 (8-76)||(39399809-39399877)
chr5 (20-79)||(1849912-1849971)
chr5 (20-79)||(1163765-1163824)
chr5 (99-142)||(39726302-39726345)
chr5 (112-142)||(38987589-38987619)
[»] chr4 (1 HSPs)
chr4 (8-79)||(25912358-25912429)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 1e-36; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 39879832 - 39879701
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcgnnnnnnnnnnnnnnnnnntccttctcc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||    
T  39879832 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagcatccttctcc 39879733  T
Q  108 ttcttgttctcctccaccacctcttcttcttc 139  Q
    ||||||||||||||||||||||||||||||||    
T  39879732 ttcttgttctcctccaccacctcttcttcttc 39879701  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 38987723 - 38987651
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987723 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 38987651  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 39726436 - 39726364
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726436 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggcg 39726364  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 40418301 - 40418230
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40418301 aaaagttgtgtcattatttccaatatctttcacacgagcaaccacagcatcagctaaacaatattttttggc 40418230  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 39168864 - 39168793
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  39168864 aaaagttgtgtcattatttccaaaatcttccacacgagcaaccacggcatcagctaaccgatattttttggc 39168793  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 3299539 - 3299480
Alignment:
Q  20 attatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3299539 attatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggc 3299480  T

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Target: chr5; HSP #7
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 3392432 - 3392373
Alignment:
Q  20 attatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  3392432 attatttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggc 3392373  T

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Target: chr5; HSP #8
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 39399877 - 39399809
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatatttttt 76  Q
    ||||||||||||||||||||||  || || ||||||||||||||| |||||||||||||| ||||||||    
T  39399877 aaaagttgtgtcattatttccaaaattttccacacgagcaaccacggcatcagctaaacggtatttttt 39399809  T

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Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 1849971 - 1849912
Alignment:
Q  20 attatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||| ||||||||||||||||||| |  |||| |||||||||||||||||||||    
T  1849971 attatttccaatatctttcacacgagcaactatggcattagctaaacgatattttttggc 1849912  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 1163765 - 1163824
Alignment:
Q  20 attatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||| ||||||| ||||||||||| |  |||| |||||||||||||||||||||    
T  1163765 attatttccaatatctttgacacgagcaactatggcattagctaaacgatattttttggc 1163824  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 142
Target Start/End: Complemental strand, 39726345 - 39726302
Alignment:
Q  99 tccttctccttcttgttctcctccaccacctcttcttcttcatc 142  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  39726345 tccttcttctccttgttctcctccaccacctcttcttcttcatc 39726302  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 142
Target Start/End: Complemental strand, 38987619 - 38987589
Alignment:
Q  112 tgttctcctccaccacctcttcttcttcatc 142  Q
    |||||||||||||||||||||||||||||||    
T  38987619 tgttctcctccaccacctcttcttcttcatc 38987589  T

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Target: chr4 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 25912358 - 25912429
Alignment:
Q  8 aaaagttgtgtcattatttccagtatctttcacacgagcaaccacagcatcagctaaacgatattttttggc 79  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25912358 aaaagttgtgtcattatttccaatatctttcacacgagcaaccacatcatcagctaaacgatattttttggc 25912429  T

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