View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2918R-Insertion-1 (Length: 1100)
Name: NF2918R-Insertion-1
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 766; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 7 - 1038
Target Start/End: Complemental strand, 41448143 - 41447097
Alignment:
| Q |
7 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacacattacgtggacgaaaatttccagt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41448143 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatcaaaaatcaccttctcctaacacattacgtggacgaaaatttccggt |
41448044 |
T |
|
| Q |
107 |
ggctgtccagagttctgcataggtatagctctttaaattggatgactgcaaaatctcaccctcagtttgagcggtttgaggtactgatacaacggaaacc |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41448043 |
ggctgtccacagttctgcataggtatagctctttaaattggatgactgcaaaatctcaccctcagtttgagcggtttgaggtactgatacagcggaaacc |
41447944 |
T |
|
| Q |
207 |
ttattgtttgaatttaaccctgccagttaaaactttgatgaatatcacttgaaaagtaaacatacattgagctatcaaactagatcttcaagtgtgttca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447943 |
ttattgtttgaatttaaccctgccagttaaaactttgatgaatatcacttgtaaagtaagcatacattgagctatcaaactagatcttcaagtgtgttca |
41447844 |
T |
|
| Q |
307 |
tacaatgaaatacatcgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagcca |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41447843 |
tacaatgaaatacatcgaatttggcgtctttagagagaaaagattcaaggttaagcctcatgaataccacattatgaaagtactattactattggagcca |
41447744 |
T |
|
| Q |
407 |
atatctttagacaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattc |
506 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41447743 |
atatctttagacaaatcaaactagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacatagattc |
41447644 |
T |
|
| Q |
507 |
atctcatatctgtgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataa |
606 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || |
|
|
| T |
41447643 |
atctcatatctatgtaccaaaaacatacacagaagcaaaagaatgccattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacaaaa |
41447544 |
T |
|
| Q |
607 |
atcaattttaccaaaagtatattctccatgcagtctttttaaaaacacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgg |
706 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447543 |
atcaattttaccaaaagtatattctcgatgcagtctttttaaaaacacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatga |
41447444 |
T |
|
| Q |
707 |
gtggtgatactttgactctaggaataactattagaggaattactcaacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447443 |
gtggtgatactttgactctaggaataactattagtggaattactcaacttaacaaatcattataaaccactatgaagctctgacacaacctggacatgtc |
41447344 |
T |
|
| Q |
807 |
gacaccctactgtaaaaaacacaaga----aatttttct-------gttgattttaatcaaaataagatatatatctattacaaacatgttgatttttct |
895 |
Q |
| |
|
||||||||| |||||||||||||||| | || || | || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41447343 |
gacaccctaatgtaaaaaacacaagacaacgacattgctacactacatatatattaatcaaaataagatatatatctattacaaacatgttgatttttct |
41447244 |
T |
|
| Q |
896 |
gnnnnnnnatttatctacacctcaa-ggatgcagcgaca--cagtaattttatgatattatattttttgttcaac-actgtgattt-cttga-taatcgg |
989 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||| |||||| |||||||||| ||||| ||||||| |
|
|
| T |
41447243 |
g-ttttttatttatctacacctcaagggatgcagcgacaacaagtgattttatgatattata-tttttcttcaacaactgtgatttccttgattaatcgg |
41447146 |
T |
|
| Q |
990 |
tcgaacactt-cgtcactgagacaggtatgtttcttgttcaaggattttt |
1038 |
Q |
| |
|
|||||||||| | ||||||| | ||||| ||||||||||||||||||| |
|
|
| T |
41447145 |
tcgaacacttccttcactgaaaacagtatg-ttcttgttcaaggattttt |
41447097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 7 - 323
Target Start/End: Complemental strand, 41458517 - 41458199
Alignment:
| Q |
7 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacacattacgtggacgaaaatttccagt |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
41458517 |
caggtttggcagcagaaaatgaattctcatcaatccaacccttaaaaactgctccaaaactaccttctcctaacacattgtctggaaaaaaatttccagt |
41458418 |
T |
|
| Q |
107 |
ggctgtccagagttctgcataggtatagctctttaaattggatgactgcaaaatctcaccctcagtttgagcggtttgaggtactgatacaacggaaacc |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||||||||| |||| ||||||||| |||||||| |
|
|
| T |
41458417 |
ggctgtcgagagttctgcataggtatagctctttaaagtggatgacggcaagatctcaccctcactttgagcggtcggaggcactgatacagcggaaacc |
41458318 |
T |
|
| Q |
207 |
ttattgtttgaatttaaccctgccagttaaaactttgatgaatatcacttgaaaagtaa---acatacattgagctatcaaactagatcttcaagtgtgt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41458317 |
ttattgtttgaatttaaccctgccagttaaaacattcatgaatatcacatgaaaagtaatatacat-tattgagctatcaaactagatcttcaagtgtgt |
41458219 |
T |
|
| Q |
304 |
tcatacaatgaaatacatcg |
323 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41458218 |
tcatacaatgaaatacatcg |
41458199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 539 - 784
Target Start/End: Complemental strand, 41457797 - 41457552
Alignment:
| Q |
539 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
638 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41457797 |
aagcaaaagaatgtcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
41457698 |
T |
|
| Q |
639 |
gtctttttaaaaacacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgggtggtgatactttgactctaggaataactatt |
738 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
41457697 |
gtctttttaaaaacacagaaggtaaaggaggaatgatcaaacaacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactctt |
41457598 |
T |
|
| Q |
739 |
agaggaattactcaacttaacaaatcattataaaccactatgaagc |
784 |
Q |
| |
|
| | ||||||||||||||||||| |||| |||||| |||||||||| |
|
|
| T |
41457597 |
acatgaattactcaacttaacaagtcatgataaacaactatgaagc |
41457552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 343 - 556
Target Start/End: Complemental strand, 41458027 - 41457815
Alignment:
| Q |
343 |
gaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaattaa |
442 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
41458027 |
gaaaagattcaacgttaagcctcatgaacaccacgttatgaaagtactattactattggagccaatatctttagacaaaacaaattagcatcaaacttaa |
41457928 |
T |
|
| Q |
443 |
caaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatctgtgtaccaaaaacatacacagaagc |
542 |
Q |
| |
|
|||||||||| ||||||||||| |||| | |||||||||||||||||||||| ||||||| |||||||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
41457927 |
caaggtaaaggaattaaggaac-ttttgaatattgaaacttagaaaccagagctacataagttcatctcatatttgtgtaccataaacataaacagaagc |
41457829 |
T |
|
| Q |
543 |
aaaagaatgccatt |
556 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
41457828 |
aaaagaatgtcatt |
41457815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 41441733 - 41441573
Alignment:
| Q |
9 |
ggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacacattacgtggacgaaaatttccagtgg |
108 |
Q |
| |
|
|||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||| | |
|
|
| T |
41441733 |
ggtttggcagcaaccaatgtattctcatcgatccaacccttaaaaactgatccaaaaccaccttctcctaacacactatccggtcgaaaatttctagtag |
41441634 |
T |
|
| Q |
109 |
ctgtccagagttctgcataggtatagctctttaaattggatgactgcaaaatctcaccctc |
169 |
Q |
| |
|
| | | ||||| || ||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
41441633 |
ccgacttaagttcagctaaggtatagctctttaaatttgatgactgcaagatctcgccctc |
41441573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 244 - 438
Target Start/End: Complemental strand, 41441431 - 41441238
Alignment:
| Q |
244 |
atgaatatcacttgaaaagtaaacatacattgagctatcaaactagatcttcaagtgtgttcatacaatgaaatacatcgaatttggcgtctttagggag |
343 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||||| ||||||||| |||||| |||||||||||| ||| |||||||| ||||| ||| |
|
|
| T |
41441431 |
atgaatatcacatgaaatgtaa-catacattgagctatcaaaccggatcttcaattgtgtttatacaatgaaatgaatcaaatttggcacctttattgag |
41441333 |
T |
|
| Q |
344 |
aaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttagacaaatcaaattagcatcaaaa |
438 |
Q |
| |
|
|||| ||||||| || ||| ||| |||||||| | || |||||||||||||||| || |||||||||| |||||| ||||||| ||| |||| |
|
|
| T |
41441332 |
aaaatattcaaggttgagcatcaacaataccacttgatcaaagtactattactatataagtcaatatcttttgacaaaacaaattatcattaaaa |
41441238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 849 - 896
Target Start/End: Complemental strand, 41457475 - 41457430
Alignment:
| Q |
849 |
ttaatcaaaataagatatatatctattacaaacatgttgatttttctg |
896 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
41457475 |
ttaatcaaaataagatatat--ctattacacacatgttgatttttctg |
41457430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 7e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 539 - 784
Target Start/End: Original strand, 16418858 - 16419100
Alignment:
| Q |
539 |
aagcaaaagaatgccattaacaaatcaaaggagttaaacaactcaaagaaaaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
638 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16418858 |
aagcaaaagaacatcattaacaaatcaaaggagttaaacaactcgaagaggaaggaaaccaaacataaatcaattttaccaaaagtatattctccatgca |
16418957 |
T |
|
| Q |
639 |
gtctttttaaaaacacagaaggtaaatgaggaatgatcaaacaacttggagaaaataaaaggaaatgggtggtgatactttgactctaggaataactatt |
738 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
16418958 |
gtctttttaaaaacacagaaggtaaaggtggaatgatca---aacttggagaaaataaaaggaaatgagtggtgatactttgactctaggaataactctt |
16419054 |
T |
|
| Q |
739 |
agaggaattactcaacttaacaaatcattataaaccactatgaagc |
784 |
Q |
| |
|
| | ||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
16419055 |
acatgaattactcaacttaacaagtcattataaacaactatcaagc |
16419100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 217 - 556
Target Start/End: Original strand, 16418518 - 16418838
Alignment:
| Q |
217 |
aatttaaccctgccagttaaaactttgatgaatatcacttgaaaagtaaacatacattgagctatcaaactagatcttcaagtgtgttcatacaatgaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16418518 |
aatttaaccctgccagttaaaactttcatgaaaatcacttgaaaagtaaacatacatcgagctatcaaactagatcttcaagtgtgttcatac------- |
16418610 |
T |
|
| Q |
317 |
tacatcgaatttggcgtctttagggagaaaagattcaagattaagcctcatgaataccacgttatgaaagtactattactattggagccaatatctttag |
416 |
Q |
| |
|
| ||||||||||||| |||| |||||||||| ||||||| ||| | | ||||| | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
16418611 |
ttcatcgaatttggcatcttgagggagaaaatattcaaggttacg--ttatgaacgc---------aaattactattactatttgagccaatatctttag |
16418699 |
T |
|
| Q |
417 |
acaaatcaaattagcatcaaaattaacaaggtaaagaaattaaggaacttttttattattgaaacttagaaaccagagttacataaattcatctcatatc |
516 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
16418700 |
acaaaacaaatcagcatcaaacttaacaaggtaaaggaattaaggaacttttgaat-attgaaacttagaaaccagagctacataagttcatctcatatt |
16418798 |
T |
|
| Q |
517 |
tgtgtaccaaaaacatacacagaagcaaaagaatgccatt |
556 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
16418799 |
tgtgtaccaaaaacataaacagaagcaaaagaatgtcatt |
16418838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 23818776 - 23818700
Alignment:
| Q |
7 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacaca |
83 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
23818776 |
caggtttggcagcagaagatgaacgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacaca |
23818700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 23827971 - 23827895
Alignment:
| Q |
7 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacaca |
83 |
Q |
| |
|
||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
23827971 |
caggttttgcagcagaagatgaatgttcatcaatccaacccttaaaaactgatccaaaatcaccatctcctaacaca |
23827895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 23824046 - 23823970
Alignment:
| Q |
7 |
caggtttggcagcagccaatgaattctcatcaatccaacccttaaaaactgatccaaaaccaccttctcctaacaca |
83 |
Q |
| |
|
||||||||||||||| | ||| | |||||||||| ||||||||||||||||||||| | || |||||||||||| |
|
|
| T |
23824046 |
caggtttggcagcagaaagtgagtgttcatcaatccggcccttaaaaactgatccaaaatcgccatctcctaacaca |
23823970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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