View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-10 (Length: 530)
Name: NF2918R-Insertion-10
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-10 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 48954666 - 48954558
Alignment:
| Q |
208 |
gcctaacaagtatgaagattgaagacaacgaagaactaatttagtaattattgtggttttacttttagtatggagattaaatcttggtttatttaacata |
307 |
Q |
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| T |
48954666 |
gcctaacaagtatgaagattgaagacaacgaagaactaatttagtaattattgtggttttaattttagtatggagattaaatcttggtttatttaacata |
48954567 |
T |
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| Q |
308 |
tatattgga |
316 |
Q |
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| T |
48954566 |
tatattgga |
48954558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 382 - 463
Target Start/End: Complemental strand, 48954553 - 48954472
Alignment:
| Q |
382 |
atatatagaggaccgagctatgtaaaggaaggttttttcccttcaaaacgatactgacgtacgtggctttgtaataaaccag |
463 |
Q |
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| T |
48954553 |
atatatagaggacggagctatgtaaaggaaggttttttcccttcaaaacgatactgacgtacgtggctttgtaacaaaccag |
48954472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 48954706 - 48954667
Alignment:
| Q |
9 |
agctttatgttctagagataaggtaagtttcttcaagcac |
48 |
Q |
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| T |
48954706 |
agctttatgttccagagataaggtaagtttcttcaagcac |
48954667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 1116469 - 1116587
Alignment:
| Q |
198 |
attaaattaagcctaacaagtatgaagattgaagacaacgaagaactaatttagtaattattgtggttttacttttagtatggagattaaatcttggttt |
297 |
Q |
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| T |
1116469 |
attaaattaagcctaacgggtatgaagattgaagttaacgaagaactaatttagtgattattgtg-----ac-tttagtatggagaataaattttggtgt |
1116562 |
T |
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| Q |
298 |
atttaacatatatattggattttga |
322 |
Q |
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| T |
1116563 |
atttaacatatacattggattttga |
1116587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 1116337 - 1116424
Alignment:
| Q |
12 |
tttatgttctagagataaggtaagtttcttcaagcacacaatagttaccttggttgtgttgtggcatatttttcatctcatctattgcatat |
103 |
Q |
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| T |
1116337 |
tttatgttctagaggtaagacaagtttctttaagcatacaatagttaccttggctgtggtg----atatttttcacctcatctaatgcatat |
1116424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 244
Target Start/End: Original strand, 24386103 - 24386178
Alignment:
| Q |
169 |
ttttattattattctaaattttatcgttgattaaattaagcctaacaagtatgaagattgaagacaacgaagaact |
244 |
Q |
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| T |
24386103 |
ttttattattattcaaaactttgttgatagttaaatcaagcctaacaagtatgaaggttgaagacaatgaagaact |
24386178 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 429
Target Start/End: Original strand, 1116678 - 1116764
Alignment:
| Q |
344 |
tgtatgatttatacttttattttcaggtagggggaataatata--tagaggaccgagctatgtaaaggaaggttttttcccttcaaaa |
429 |
Q |
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| T |
1116678 |
tgtatgattaatacttttattttcaggta-gagtaataatatatgtagaggattgatctatgtaaaggatagctttttcccttcaaaa |
1116764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 16153283 - 16153246
Alignment:
| Q |
207 |
agcctaacaagtatgaagattgaagacaacgaagaact |
244 |
Q |
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| T |
16153283 |
agcctaacaagtatgaaaattgaagacaatgaagaact |
16153246 |
T |
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