View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-12 (Length: 420)
Name: NF2918R-Insertion-12
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 374
Target Start/End: Original strand, 1684852 - 1685228
Alignment:
| Q |
8 |
atttcctccttatgcgaaccttatcatgttttgagttttgtttgaaacaagaccttttttgaatttaacacggcaag----------tttacaaagggac |
97 |
Q |
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| T |
1684852 |
atttcctccttatgcgaactttatcatgttttgaattttgtttgaaacaagaccttttttgaatttaacacggcaagccaaggcaagtttacaaagggac |
1684951 |
T |
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| Q |
98 |
cctannnnnnnatattatttgagggtctattttttatcgtcaagtgttgtgcatcattctttctttgtatctgtttcatgcaaagcaaactcgtaacatt |
197 |
Q |
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| T |
1684952 |
cctatttttttattttatttgagggtctattttttatcgtcaagtgctgtgcatcattctttctttgtatctgtttcatgcaaagcaaaatcgtaacatt |
1685051 |
T |
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| Q |
198 |
catctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggtatcgcaattaaaggtgcaaacaaaccctgttgtttatgcataa |
297 |
Q |
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| T |
1685052 |
catctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggtatcgtaattaaaggtgcaaacaaaccctgttgtttatgcataa |
1685151 |
T |
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| Q |
298 |
ccagtgcaaaaaatctgaannnnnnnnnnnnagtcatagtttttgggtgccgcatagggtttgttactctcctccat |
374 |
Q |
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| T |
1685152 |
ctagtgcaaaaaatctgaattttttatttttagtcatagtttttgggtgccgcatagggtttgttactctcctccat |
1685228 |
T |
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Back To:
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 44923296 - 44923359
Alignment:
| Q |
192 |
aacattcatctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggta |
255 |
Q |
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| T |
44923296 |
aacattcatctactttctataaacttcaaaaatattgatacccttttgctagaatcgattggta |
44923359 |
T |
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