View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-2 (Length: 1020)
Name: NF2918R-Insertion-2
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 467 - 821
Target Start/End: Complemental strand, 33025159 - 33024803
Alignment:
| Q |
467 |
aaatgccgaaattgttgtgccaaacactataatcaaaggttcaaaccaaggt---tttaagcctcactagtcactacgattttgagaaactagcnnnnnn |
563 |
Q |
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| T |
33025159 |
aaatgccaaaattgttgtgccaaacactgtaatcaaaggttcaaaccaaggtggttttaagcctcactagtcactacgattttgagaaactagcaaaaaa |
33025060 |
T |
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| Q |
564 |
nnntgggaacatttattcatatgtccctaaaacggacacatcccctaatcccttcccttacaataaccataaccaacaaagcatgataacggaaatagct |
663 |
Q |
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| T |
33025059 |
aa-tgggaacatttattcatatgtccctaaaacggacacatcccctaatcccttccctttcaataaccataaccaacaaagcatgataacggaaatagct |
33024961 |
T |
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| Q |
664 |
catccaatttctttcacaaaacacatccccgtttcagaaccacaaaatccctcatcatagcttaccgtgtgtgaggcatctaacatcaagaaaatggcat |
763 |
Q |
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| T |
33024960 |
catccaatttctttcacaaaacacatccccgtttcagaaccacaaaatccctcatcatagcttaccgtgtgtgaggcatctaacatcaagaaaatggcat |
33024861 |
T |
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| Q |
764 |
aacataatacaaataattggctcagatataaaaaagaagcaagattatcaatcgctga |
821 |
Q |
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| T |
33024860 |
aacataatacaaataattggctcagatataaaaaagaagcaagattatcaatcgctga |
33024803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 425
Target Start/End: Complemental strand, 33025578 - 33025159
Alignment:
| Q |
9 |
ggaatgaactatattttatattaaacaattactacaatcttttcaaaaagcttataatgataagaaaaaa-caattttttcaaagatatt--agtgattt |
105 |
Q |
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| T |
33025578 |
ggaatgaactatattttat--taaacaattactacaatcttttcaaaaagcttataatgaaaagaaaaaaacaattttttcaaagatattgtagtgattt |
33025481 |
T |
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| Q |
106 |
ttgaaaataaatagcttctaagaaatagcccatccccctaatccttaaacactatttcaa-nnnnnnnnngacaaatcaaaatatttattttagattgtt |
204 |
Q |
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| T |
33025480 |
ttgaaaataaatagcttctaagaaatagcccatccccctaatccttaaacactatttcaattttttttttgacaaatcaaaatatttattttagattgtt |
33025381 |
T |
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| Q |
205 |
atccttccnnnnnnnggtacaacgataatattttactaatatgttaaaacacacactaaagttaaatgatgacaacttctgatgtcatgattagcttcta |
304 |
Q |
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| T |
33025380 |
atccttcctttttttggtacaacaataatattttactaatatgataaga-------agaatttaaatgatgacaacttctgatgtcatgattagcttcta |
33025288 |
T |
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| Q |
305 |
agagcttaataagattttagtgtaaaaacttcttcattctttagtaaaatg--------tgtttataattaattttgcggaagaatgtacttacgttgat |
396 |
Q |
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| T |
33025287 |
agagcttaataagattttagtgtaaaaacttcttcattctttagtaaaatgtgtgtttatgtctataattaattttgcggaagaatgtacttacgttgat |
33025188 |
T |
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| Q |
397 |
atcatggtttgtcaaattatggtggaata |
425 |
Q |
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| T |
33025187 |
atcatggtttgtcaaattatggtggaata |
33025159 |
T |
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