View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-3 (Length: 925)
Name: NF2918R-Insertion-3
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 83 - 898
Target Start/End: Complemental strand, 1404825 - 1404011
Alignment:
| Q |
83 |
gattcaaaatacattattccctgacaaaaacttaaacattaaatctgtcaaataaataaataaaac-tttggttgaggaaataatgtttcctgtaaaaga |
181 |
Q |
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| T |
1404825 |
gattcaaaatacattattccctgacaaaaacttaaacattaaatctgtcaaataattaaaaaaaacctttggttgaggaaataatgtttcctgtaaaaga |
1404726 |
T |
|
| Q |
182 |
ctatttatgaattttggaagaaattaaaaactaaaattctaatgttggttatttgtcggctggctccttcatagagtagacatgacatgtcagtgattaa |
281 |
Q |
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| T |
1404725 |
ctatttatgaattttggaagagattaaaaactaaa-ttctaatgttgattatttgtcggctggctccttcatagagtagacatgacatgtcagtgattaa |
1404627 |
T |
|
| Q |
282 |
ctgcatcaacttgaagacaggcttgacattaaaatatttgaagttatttaaatcttaaactaaagtccaatttatctagacagtgacacatttctccttt |
381 |
Q |
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| T |
1404626 |
ctgcatcaacttgaagccaggcttgatattaaaatatttgaagttatttaaatcttaaactaaagtccaatttatttagacagtgacacttttctccttt |
1404527 |
T |
|
| Q |
382 |
annnnnnnaattattaattgcatgaatggattggttattagttgtggtcattaatgtaacagaaagtgatgtctttcttggannnnnnnnnnnnnaaaga |
481 |
Q |
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| T |
1404526 |
atttttttaattattaattgcatgaatggattggttattagttgtggtcattaatgtaacagaaagtgatgtctttcttggatttttctttttttaaaga |
1404427 |
T |
|
| Q |
482 |
taggagttaagtttcattttgagttgttgaattgaatgtgtcacatgttactatatcatcctttactttaatgtatattctattaaataatttgatccac |
581 |
Q |
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| T |
1404426 |
taggagttaagtttcattttgagttgttgaattgaatgtgtcacatgttactatatcattctttactttaatgtatattctattaaataatttgatccac |
1404327 |
T |
|
| Q |
582 |
acaattaataacagaagatatagtnnnnnnnntgtttttgtaatttcatatgttactattacattctcatatgttctaggacc--aaaactactgtaact |
679 |
Q |
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| T |
1404326 |
acaattaataacagaagatatagtaaaaaaaatgtttttgtaatttcatatgttactattacattctcacatgttttaggaccaaaaaactactgtaact |
1404227 |
T |
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| Q |
680 |
gtaataagacaaactaagcttttcagaggttttggattatctagtactattagtgtttttatttgaagtttgaaaaaattgtttccttgagaacaaaagt |
779 |
Q |
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| T |
1404226 |
gtaataagacaaactaaacttttcagaggttttggattatctagtactatttgtgtttttatttgaagtttgaaaaaattgtttccttgagaacaaaagt |
1404127 |
T |
|
| Q |
780 |
gatgatgggaaatgagattatcttccttttctggctaagattttgagccaaccactgaacaagttcagaaacaagttatttcattgggttagttttcaaa |
879 |
Q |
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| T |
1404126 |
gatgatgggaaatgagattatctt-cttttttggctaagattttgagccaaccactgaacaagttca-aaacaagttatttcatt-ggttagtttttaaa |
1404030 |
T |
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| Q |
880 |
tctgttaatatgggtatta |
898 |
Q |
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| T |
1404029 |
tctgttaatatggttatta |
1404011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 1404989 - 1404934
Alignment:
| Q |
9 |
attcacctcttgaaggatcaatcttaccgattacacatgggacaactttattttac |
64 |
Q |
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| T |
1404989 |
attcacctcttgaaggatcaatcttaccggttacacatgggacaactttattttac |
1404934 |
T |
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