View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-8 (Length: 632)
Name: NF2918R-Insertion-8
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 632
Target Start/End: Original strand, 12550673 - 12551297
Alignment:
| Q |
8 |
aaaagtaaggttttaaattggggtaacaattatggtcacacacgtgtcgatctatgatatgaaagaaagtcattattgatctggatagatcgagaaagtt |
107 |
Q |
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| T |
12550673 |
aaaagtaaggttttaaattggggtaacaattatggtcacacacatgtcgatctatgatatgaaagaaagtcattattgatctggatagaccgagaaagtt |
12550772 |
T |
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| Q |
108 |
atctggattggagcactctgacgtctaagatagtaagtgaccaaagagtgtgaggtttacgagttgagaaattgtgtaccttgcattgttgtgagaagga |
207 |
Q |
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| T |
12550773 |
atctggattggagcactctgacgtataagatagtaagtgaccaaagagtgtgaggtttacgagttgagaaattgtgtaccttgcattgttgtgagaaaga |
12550872 |
T |
|
| Q |
208 |
ttatttatacaatcctagaaaggagctgttgatgcgtaaagggaggaacgttacatatgacacccttcattaatggtgtgctcttgcagccgttcaaggt |
307 |
Q |
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| T |
12550873 |
gtatttatacaatcctagaaaggagctgttgatgcgtaaagggaggaacgttacatatgacacccttcattaatggtgtgctcttgcagccgttcgaggg |
12550972 |
T |
|
| Q |
308 |
cattgaactcgttgaggcgttacaaatttcaagaatcttatgccaggtggattggtctttgggtcaagtgtgctttaaaagagggttgtgacttgtgagt |
407 |
Q |
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| T |
12550973 |
cattgaactcgttgaggcgttacaaatttcaagaatcttatgccaggtggattggtctttgggtcaagtgtgctttaaaagagggttgtgacttgtgagt |
12551072 |
T |
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| Q |
408 |
tcgcaagagattggaccttagactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaaggtcttgatgttataatttagat |
507 |
Q |
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| T |
12551073 |
tcgcaagagattggaccttagactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaagatcttgatgttataatttagat |
12551172 |
T |
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| Q |
508 |
cgttgtcacaaacttttatttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataatt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12551173 |
cgttgtcacaaacttttatttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataatt |
12551272 |
T |
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| Q |
608 |
aaattctgcgtcacaccctgcaaca |
632 |
Q |
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| T |
12551273 |
aaattctgcgtcacaccctgcaaca |
12551297 |
T |
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