View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918R-Insertion-9 (Length: 553)
Name: NF2918R-Insertion-9
Description: NF2918R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918R-Insertion-9 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 351
Target Start/End: Complemental strand, 42471465 - 42471130
Alignment:
| Q |
9 |
agatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcagg |
108 |
Q |
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| T |
42471465 |
agatgaagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcagg |
42471366 |
T |
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| Q |
109 |
tcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcg |
208 |
Q |
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| T |
42471365 |
tcaaccacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacatcagcg |
42471266 |
T |
|
| Q |
209 |
atgggtttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaagatgaata |
308 |
Q |
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| T |
42471265 |
atgggtttacttgtttccatggcactgtctttgaaaatggattggatgcagctttttcctctcacaagatcaatgaagcatac-------aagatgaata |
42471173 |
T |
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| Q |
309 |
caacacatgtgtcctatttgttccaggctcaacagacatgtat |
351 |
Q |
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| T |
42471172 |
caacacatgtgtcctatttgttccaggctcaacagacatgtat |
42471130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 346 - 551
Target Start/End: Complemental strand, 42468438 - 42468239
Alignment:
| Q |
346 |
atgtatcctgtgactcaaactcttgacaattggaaatctcttcggggaataatacctgaacagaattaaccgtgactggtatgactgtctaatcgtcata |
445 |
Q |
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| T |
42468438 |
atgtatcttgtgactcgaactcttgacaattggaaatctctttggggaataatacctgaacagaattaaccgtgactggtatgactgtgtaatcgtcata |
42468339 |
T |
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| Q |
446 |
atgctgccagtactgtgatactt-aagaataaaaattgatgtaataaaagtgtgactctttgttgttttccacatatctagtaattgttggcttctcttg |
544 |
Q |
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| T |
42468338 |
atgctgccagtactgtgatacttaaagaataaaaattgatgtaataaaagtgtgactccttgttgttttccaca-------taattgttggcttctgttg |
42468246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 3352325 - 3352608
Alignment:
| Q |
18 |
caaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcaggtcaaccaca |
117 |
Q |
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| T |
3352325 |
caaaataatctcaggccctaagaaaattgctgacatgtttccttttttcaaaggaaccatgtttgaaaagggagtagatgctgcatttaggtcaactaag |
3352424 |
T |
|
| Q |
118 |
gacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatgggttta |
217 |
Q |
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| T |
3352425 |
ggcaaataagtttacttattcaaaggagacaagtatgctcgtatagattatggaaccaaccgtctggttcaaagtatcaagaacattatcgacgggttta |
3352524 |
T |
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| Q |
218 |
cttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctcacaaaatcaacgaagcatactttttcaaag |
301 |
Q |
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| T |
3352525 |
tgtgtttccgtggcacaatctttgaaaatggaattgatgcagcttttgcttctcataagactaatgaagcctactttttcaaag |
3352608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 42046271 - 42046115
Alignment:
| Q |
16 |
gacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcaggtcaacca |
115 |
Q |
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|||||| ||||||| |||||||| | ||| ||||| ||||||||||||||||||| || |||||||||| |||||| || || || | |||||||| | |
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| T |
42046271 |
gacaaattaatctccggtcctaaaaaaattgctgacgtgtttccttttttcaaaggaacggtgtttgaaagcggaatagacgccgcatataggtcaacta |
42046172 |
T |
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| Q |
116 |
cagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaa |
172 |
Q |
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| T |
42046171 |
agggcaaagaagcttacttatttaaaggagaccaatatgctcgtatagactatggaa |
42046115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 14452602 - 14452764
Alignment:
| Q |
14 |
aagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcaggtcaac |
113 |
Q |
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|||||||||||||| | |||||||||| ||| | ||||||||||||||||||||||| ||||| || ||||| ||||| || ||||| | || ||||| |
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| T |
14452602 |
aagacaaaataatcactggtcctaagaaaattgccgacatgtttccttttttcaaaggaaccgtattcgaaaatggaatagacgctgcagtaagatcaac |
14452701 |
T |
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| Q |
114 |
cacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaa |
176 |
Q |
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| T |
14452702 |
tgtgggcaaagaagttcacttattcaaaggagacaagtatgctcgtatagactatggcaccaa |
14452764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 37407 - 37149
Alignment:
| Q |
14 |
aagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcaggtcaac |
113 |
Q |
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|||||||||||||||| ||||||| || ||| | || |||||||||||||| |||| || | |||||| | ||||| || ||||| ||||||||||| |
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| T |
37407 |
aagacaaaataatctcaggtcctatgaaaattgcggaaatgtttccttttttagaaggaacgggttttgaacatggaatagacgctgcattcaggtcaac |
37308 |
T |
|
| Q |
114 |
cacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatggg |
213 |
Q |
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||||||| | |||||| |||| |||||| ||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | | ||| |
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| T |
37307 |
tttgaacaaagaggtttacttgttcagaggagataagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcggg |
37208 |
T |
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| Q |
214 |
tttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
272 |
Q |
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|||||||||||||| | ||| |||||||||| ||| | ||||| |||||||| ||||| |
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| T |
37207 |
tttacttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
37149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 63463 - 63205
Alignment:
| Q |
14 |
aagacaaaataatctcgggtcctaagataatctctgacatgtttccttttttcaaagggaccgtgtttgaaaacggaatcgatgctgcgttcaggtcaac |
113 |
Q |
| |
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|||||||||||||||| ||| ||| || ||| | || |||||||||||||| |||| || | |||||| | ||||| || || || ||||||||||| |
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| T |
63463 |
aagacaaaataatctcaggttctatgaaaattgcggaaatgtttccttttttagaaggaacgggttttgaacatggaatagacgccgcattcaggtcaac |
63364 |
T |
|
| Q |
114 |
cacagacaaagaagcttacttattcaaaggagacaagtatgctcgtatagattatggaaccaatagtctcgttcaaagtatcgagaacattagcgatggg |
213 |
Q |
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||||||| | |||||| |||| |||||||||||||||||||||||| ||||| || || ||||| ||||||| |||| | |||| | | ||| |
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| T |
63363 |
tttgaacaaagaggtttacttgttcagaggagacaagtatgctcgtatagactatggcacgaacagtcttgttcaaattatcagggacatcaacagcggg |
63264 |
T |
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| Q |
214 |
tttacttgtttccgtggcactgtctttgaaaatggattggatgcagcttttgcctctca |
272 |
Q |
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|||||||||||||| | ||| |||||||||| ||| | ||||| |||||||| ||||| |
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| T |
63263 |
tttacttgtttccgagacacgatctttgaaaagggaatcgatgcggcttttgcttctca |
63205 |
T |
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Back To:
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