View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918_high_4 (Length: 395)

Name: NF2918_high_4
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918_high_4
NF2918_high_4
[»] chr2 (7 HSPs)
chr2 (13-377)||(23776762-23777127)
chr2 (182-377)||(23802394-23802593)
chr2 (163-377)||(27604341-27604559)
chr2 (156-303)||(24985657-24985804)
chr2 (156-377)||(22800636-22800861)
chr2 (156-377)||(25596869-25597094)
chr2 (161-194)||(20270742-20270775)
[»] chr7 (5 HSPs)
chr7 (156-377)||(7964875-7965100)
chr7 (25-129)||(32298219-32298323)
chr7 (156-377)||(18099168-18099393)
chr7 (156-300)||(14952592-14952736)
chr7 (156-300)||(15380185-15380329)
[»] scaffold0059 (1 HSPs)
scaffold0059 (156-377)||(37193-37418)
[»] chr4 (1 HSPs)
chr4 (163-377)||(12811828-12812046)
[»] chr1 (4 HSPs)
chr1 (156-377)||(10159685-10159910)
chr1 (161-374)||(17024048-17024265)
chr1 (156-377)||(25400778-25401002)
chr1 (156-377)||(21291900-21292125)
[»] chr3 (3 HSPs)
chr3 (162-377)||(11426770-11426989)
chr3 (156-377)||(16924474-16924698)
chr3 (239-377)||(22927574-22927716)
[»] chr5 (2 HSPs)
chr5 (162-377)||(22805682-22805901)
chr5 (304-377)||(24924898-24924971)
[»] scaffold0031 (1 HSPs)
scaffold0031 (156-377)||(34390-34615)
[»] chr8 (2 HSPs)
chr8 (161-374)||(22262987-22263204)
chr8 (162-330)||(12149611-12149783)
[»] chr6 (2 HSPs)
chr6 (161-358)||(18377353-18377554)
chr6 (156-303)||(23011449-23011596)
[»] scaffold0056 (2 HSPs)
scaffold0056 (161-377)||(50650-50870)
scaffold0056 (161-377)||(55751-55971)
[»] scaffold0054 (1 HSPs)
scaffold0054 (272-377)||(77798-77907)
[»] scaffold0099 (1 HSPs)
scaffold0099 (304-375)||(38133-38207)
[»] scaffold0039 (1 HSPs)
scaffold0039 (156-226)||(47147-47217)


Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 23776762 - 23777127
Alignment:
13 catcatcaggagaaaaacaagaaaagaacacgattatgattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccctagg 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23776762 catcatcaggagaaaaacaagaaaagaacacgattaagattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccctagg 23776861  T
113 agagaaaaatcgcaaaatcgcttaatcgcttcttcacaatagt-acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgc 211  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| || ||||||||||||||| |||||||||||||||||||| | |    
23776862 agagaaaaatcacaaaatcgcttaatcgcttcttcacaatagttacacggtaccaactttttgtgtcaacaaattaaccattttgtgattactctcgtcc 23776961  T
212 attcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaatactttgaccgaaaatgctagaacttgagggactatgtacgttattgtgaa 311  Q
    ||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
23776962 atttgttgtcttaacagattcatcgactctgttgttaagggtagtagagtactttgaccgaaaatgctagaacttgagggactatgtacgtaattgtgaa 23777061  T
312 cgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcat 377  Q
    || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
23777062 cggatttttttgttctgcaaatgcggacgcactattatgcacatttgccatcatcgaagttggcat 23777127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 182 - 377
Target Start/End: Original strand, 23802394 - 23802593
Alignment:
182 aaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaatactttgaccgaaaatgctag 281  Q
    ||||| ||||||| |||||||||||||| |||| |||| ||||||| ||||||||||||||||||||| ||| ||||| || ||||||| |||||||| |    
23802394 aaattaaccatttcgtgattactctcatccatttgttgccttaacaaattcatcgaatctgttgttaatggtggtagagtattttgaccaaaaatgctcg 23802493  T
282 aacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcat 377  Q
    |||| ||||||||||||| |||    |||||||| | ||||| ||| |||| | ||||||||||||||||||| |||||| |||||||||||||||||||    
23802494 aactcgagggactatgtatgttgtgcattgtgaatggatttgcttggtctgaaaatgcggacgcactattatgtacattttccatcatcgaagttggcat 23802593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 163 - 377
Target Start/End: Complemental strand, 27604559 - 27604341
Alignment:
163 accaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaata 262  Q
    ||||||||||||||| |||||||| | ||||| ||| |||||||||| ||||  ||||||||||| |||||||||||||||||| || | | ||||| ||    
27604559 accaatttgttgtgttaacaaattaatcatttcgtggttactctcatccattttttgtcttaacaaattcatcgaatctgttgtcaatgttggtagagta 27604460  T
263 ctttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttg 358  Q
     |  |||| || |||||||||||||||||||||||||||||    ||||||||||  |||| ||| |||||| |||| |||||||||||||| |||||||    
27604459 ttccgaccaaatatgctagaacttgagggactatgtacgttgtgcattgtgaacgggtttgcttggtctgcaaatgcagacgcactattatgtacatttg 27604360  T
359 ccatcatcgaagttggcat 377  Q
    ||||||||  |||||||||    
27604359 ccatcatcagagttggcat 27604341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 303
Target Start/End: Complemental strand, 24985804 - 24985657
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| ||||||||||||||||| ||| |||| ||||||| ||| |||||||||| |||| |||||||||||| |||||||||||||||||| ||  || |    
24985804 acacggtaccaatttgttgtgttaacgaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatcgaatctgttgtcaaccgtgg 24985705  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt 303  Q
    |||| || |  |||||||||||||||||||||||||||||||||||||    
24985704 tagagtattccgaccgaaaatgctagaacttgagggactatgtacgtt 24985657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 22800636 - 22800861
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| || ||| |||||||| ||||||| || ||||||||||| |||| |||| ||||| | ||| |||||||||||||||| |||| |    
22800636 acacggtaccaattttttttgtaaacaaattaaccatttcgtaattactctcatccatttgttgccttaaaaaattaatcgaatctgttgttacgggtgg 22800735  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || ||  ||| |||||||||||| ||||||||||||||| | |    |||||||||||||||| ||| ||| || ||| |||| ||||||||||     
22800736 tagagtatttcaaccaaaaatgctagaaattgagggactatgtatggtgtgcattgtgaacgaatttgcttgatctacaaatgtggacacactattatgt 22800835  T
352 acatttgccatcatcgaagttggcat 377  Q
    | ||||| ||||||| ||||||||||    
22800836 aaatttgacatcatcaaagttggcat 22800861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 25596869 - 25597094
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| ||||||||||||||| ||||||| |||||||| ||||| |||| ||||| ||||||  |||| ||||||||| ||||||  |      
25596869 acacggtaccaatttcttgtgtcaacaaattaaccatttcgtgattaccctcatccatttgttgtgttaacaagttcaccgaatctgtcgttaagactga 25596968  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    || | || || |||| ||||||||||||||| |||||||||||| |||    |||||||||  ||||| ||| ||| || |||||||||||||||||||     
25596969 tatagtatttcgaccaaaaatgctagaactttagggactatgtatgttgtgcattgtgaacatatttgcttggtcttcaaatgcggacgcactattatgt 25597068  T
352 acatttgccatcatcgaagttggcat 377  Q
    ||||||||||| |  |||||||||||    
25597069 acatttgccattactgaagttggcat 25597094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 20270742 - 20270775
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattt 194  Q
    |||||||||||||||||||||| |||||||||||    
20270742 gtaccaatttgttgtgtcaacatattgaccattt 20270775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 7964875 - 7965100
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||||||||  ||||| |||||||| ||||||  | |    
7964875 acacagtaccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatccatttgttgtcttaacaagttcattgaatctgtcgttaagactgg 7964974  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || || |||| |||||| |||||||||||||||||||| ||||    |||||||||  ||||| ||| |||||| |||||||||||||||||||     
7964975 tagattatttcgaccaaaaatgttagaacttgagggactatgtgcgttgtgaattgtgaacagatttgcttggtctgcaaatgcggacgcactattatgt 7965074  T
352 acatttgccatcatcgaagttggcat 377  Q
    |||||||||||||| |||||||||||    
7965075 acatttgccatcattgaagttggcat 7965100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 32298323 - 32298219
Alignment:
25 aaaaacaagaaaagaacacgattatgattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccctaggagagaaaaatcg 124  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
32298323 aaaaacaagaaaagaacacgattaagattgaaaatcaatctaatcgacaaaacagactctcacaaggggcgatgagtgaaaccgtaggagagaaaaatcg 32298224  T
125 caaaa 129  Q
    |||||    
32298223 caaaa 32298219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 156 - 377
Target Start/End: Complemental strand, 18099393 - 18099168
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||||||| || |||||||| ||||||| ||| ||| |||||| |||| |||||||||||| ||||||||||| ||| || || ||| |    
18099393 acacggtaccaatttgttgcgttaacaaattaaccatttcgtggttagtctcatccatttgttgtcttaacaaattcatcgaatatgtcgtcaacggtgg 18099294  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    || | || |  |||| ||||| |||||||||||||||| |||||||||    |||||||||  ||||| ||| |||||| ||||||||||||||| |||     
18099293 tatagtattccgaccaaaaattctagaacttgagggacaatgtacgttgtgcattgtgaacatatttgcttgatctgcaaatgcggacgcactatgatgt 18099194  T
352 acatttgccatcatcgaagttggcat 377  Q
    |||||| |||||||||||||||||||    
18099193 acattttccatcatcgaagttggcat 18099168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 14952592 - 14952736
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| ||  || |||||||| ||||||| ||| |||||||||| |||| |||||||||||| |||||| |||| |||||| ||     |    
14952592 acacggtaccaatttattacgttaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatggaatttgttgtcaacaacgg 14952691  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtac 300  Q
    |||| || |  |||| ||||||||||||||||||||| |||||||    
14952692 tagagtattccgaccaaaaatgctagaacttgagggaatatgtac 14952736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 15380185 - 15380329
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| ||  || |||||||| ||||||| ||| |||||||||| |||| |||||||||||| |||||| |||| |||||| ||     |    
15380185 acacggtaccaatttattacgttaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatggaatttgttgtcaacaacgg 15380284  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtac 300  Q
    |||| || |  |||| ||||||||||||||||||||| |||||||    
15380285 tagagtattccgaccaaaaatgctagaacttgagggaatatgtac 15380329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 37193 - 37418
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| ||||||||| ||||| ||||||| ||||||||||||||  ||| |||||||||||| ||||||||||||  ||| ||||  | |    
37193 acacggtaccaatttcttgtgtcaataaattaaccatttcgtgattactctcatctatttgttgtcttaacaaattcatcgaatcacttgataagactgg 37292  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || ||||||| ||||||||||||||||||||||||||| ||||     ||||||||| ||||| ||| ||||||||||||||| |||||||||||    
37293 tagagtattttgaccaaaaatgctagaacttgagggactatgtgcgttgtgagttgtgaacggatttgcttggtctgcagatgcggacacactattatgc 37392  T
352 acatttgccatcatcgaagttggcat 377  Q
    |||||| |||||||||||||||||||    
37393 acattttccatcatcgaagttggcat 37418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 163 - 377
Target Start/End: Complemental strand, 12812046 - 12811828
Alignment:
163 accaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaata 262  Q
    |||||||||| |||| |||||||| ||||||| |||||||||||||| |||| |||||||||||| |||||||||||||||||  || ||| ||||| ||    
12812046 accaatttgtcgtgttaacaaattaaccatttcgtgattactctcatccatttgttgtcttaacaaattcatcgaatctgttgacaacggtggtagagta 12811947  T
263 ctttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttg 358  Q
     || |||| ||||||||||||||| |||||||||||| |||    |||||||||| ||||| ||| |||||| |||||||| |||||||||| | |||||    
12811946 tttcgaccaaaaatgctagaacttaagggactatgtatgttgtgcattgtgaacggatttgattgatctgcaaatgcggacacactattatgtatatttg 12811847  T
359 ccatcatcgaagttggcat 377  Q
    ||||||| |||||||||||    
12811846 ccatcattgaagttggcat 12811828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 156 - 377
Target Start/End: Complemental strand, 10159910 - 10159685
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| ||||||||||||||||| |||||||| ||||||||||| |||||||| | || | |||||||||||| |||||||||||||||||| || | | |    
10159910 acacggtaccaatttgttgtgttaacaaattaaccattttgtggttactctcgtccaattgttgtcttaacaaattcatcgaatctgttgtcaacgttgg 10159811  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || |  |||| ||||||||||||||||||||||||||||||||    ||| |||||| ||||  ||| |||||| |||||||| ||||||||||     
10159810 tagagtattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattatgaacggattttcttggtctgcaaatgcggacacactattatgt 10159711  T
352 acatttgccatcatcgaagttggcat 377  Q
    |||||||| |||||||||||||||||    
10159710 acatttgcaatcatcgaagttggcat 10159685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 17024048 - 17024265
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa 260  Q
    |||||||||||||||| |||| |||| |||||||  ||||||||||||| |||| |||||||||||| |||||||||||  ||| |||||  | |||||     
17024048 gtaccaatttgttgtgccaacgaattaaccatttcatgattactctcatccatttgttgtcttaacaaattcatcgaattagtttttaagactggtagag 17024147  T
261 tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt 356  Q
    || || |||| |||||||||||||||  ||||||||||  |||    |||||||||| ||||||||| |||| | ||| ||||||||||||||||| |||    
17024148 tatttcgaccaaaaatgctagaactttggggactatgtgtgttgtgaattgtgaacggatttgtttggtctgaaaatgtggacgcactattatgcaaatt 17024247  T
357 tgccatcatcgaagttgg 374  Q
    | ||||||||||||||||    
17024248 ttccatcatcgaagttgg 17024265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 25400778 - 25401002
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgatta--ctctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggt 253  Q
    |||| |||| |||||||| ||| |||||||| ||||||||||| |||  ||||| | |||| || ||||||||| |||||| ||||||||||| || | |    
25400778 acacggtacaaatttgttatgttaacaaattaaccattttgtggttatactctcgtccatttgtcgtcttaacaaattcattgaatctgttgtcaacgtt 25400877  T
254 agtagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt-attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgca 352  Q
     ||||| || |  ||||  ||||||||||||||||||||| ||||||||  |||||||||| ||||| ||| |||||| |||||||| |||||||||| |    
25400878 ggtagagtattccgaccagaaatgctagaacttgagggaccatgtacgtgcattgtgaacggatttgcttggtctgcaaatgcggacacactattatgta 25400977  T
353 catttgccatcatcgaagttggcat 377  Q
     ||||||||||||||||||||||||    
25400978 gatttgccatcatcgaagttggcat 25401002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 377
Target Start/End: Complemental strand, 21292125 - 21291900
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||||||| || |||||| | ||||||| ||| ||| |||||| |||| ||| ||| |||| ||||||||||||||||||||| ||| |    
21292125 acactgtaccaatttgttgcgttaacaaactaaccatttcgtggttagtctcatccatttgttatctcaacacattcatcgaatctgttgttaatggtgg 21292026  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || |  |||| ||||| ||| ||||||| |||||||||| |||    || ||||||| ||||| ||| |||| | |  |||| |||||||||||     
21292025 tagagtattccgaccaaaaatactataacttgaaggactatgtatgttgtgcatagtgaacggatttgcttggtctgaaaaaacggaagcactattatgt 21291926  T
352 acatttgccatcatcgaagttggcat 377  Q
    ||||||||||||||||||||||||||    
21291925 acatttgccatcatcgaagttggcat 21291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 162 - 377
Target Start/End: Original strand, 11426770 - 11426989
Alignment:
162 taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat 261  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||  |||||||||||| |||||| ||||||||| | || ||| ||||| |    
11426770 taccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatccatgtgttgtcttaacaaattcattgaatctgttttcaacggtggtagagt 11426869  T
262 actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacattt 357  Q
    | || |||| |||||||||||||||||||||||||||| |||    |||||||||| ||||| ||| |||||| ||||||| ||||| ||||| ||||||    
11426870 atttcgaccaaaaatgctagaacttgagggactatgtatgttgtgcattgtgaacggatttgcttgatctgcaaatgcggaagcacttttatgtacattt 11426969  T
358 gccatcatcgaagttggcat 377  Q
     ||||||| |||||| ||||    
11426970 tccatcattgaagtttgcat 11426989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 16924474 - 16924698
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||| |||||||||| |||| |||||||||||| ||||||| ||| |||||| || ||| |    
16924474 acacggtaccaattttttgtgtcaacaaattaaccatttcgtggttactctcatccatttgttgtcttaacaaattcatc-aatgtgttgtcaacggtgg 16924572  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||| || |  |||| ||||||||||||||||||||||||||||||||    |||||||||| ||||| ||| |||| | |  || | |||||| ||||     
16924573 tagagtattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattgtgaacggatttgcttggtctgtaaaaacgaaagcactactatgt 16924672  T
352 acatttgccatcatcgaagttggcat 377  Q
    | ||||||||||||| ||| ||||||    
16924673 aaatttgccatcatcaaaggtggcat 16924698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 377
Target Start/End: Original strand, 22927574 - 22927716
Alignment:
239 tctgttgttaagggtagtagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatg 334  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||    | |||||||| ||||| ||| | |||| |||    
22927574 tctgttgttaagggtggtagagtactttgaccgaaaatgctagaacttgagggaatatgtacgttgtgcactgtgaacggatttgcttggtgtgcaaatg 22927673  T
335 cggacgcactattatgcacatttgccatcatcgaagttggcat 377  Q
    |||  ||| ||||||||||||||||||| ||||||| ||||||    
22927674 cggttgcattattatgcacatttgccattatcgaagatggcat 22927716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 162 - 377
Target Start/End: Original strand, 22805682 - 22805901
Alignment:
162 taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat 261  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||  ||| ||||| ||||||  ||||||||| |||| ||||||  | ||||| |    
22805682 taccaatttgttgtgtcaacaaattaaccatttcgtgattactctcatctatttgttgtattaacaagttcatcgaacctgtcgttaagactggtagagt 22805781  T
262 actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacattt 357  Q
    | || |||| ||||||||||||||||| |||||||||| |||    |||||||||| ||||| ||| |||||| |||| |||||||||||||| ||||||    
22805782 atttcgaccaaaaatgctagaacttgaaggactatgtatgttgtgcattgtgaacggatttgcttggtctgcaaatgctgacgcactattatgtacattt 22805881  T
358 gccatcatcgaagttggcat 377  Q
    | ||| ||||||||||||||    
22805882 gtcattatcgaagttggcat 22805901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 24924971 - 24924898
Alignment:
304 attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcgaagttggcat 377  Q
    |||||||||| ||||| ||| |||||| |||||||||||||||||||  |||||| ||||||||||||||||||    
24924971 attgtgaacggatttgcttggtctgcaaatgcggacgcactattatgtgcatttgtcatcatcgaagttggcat 24924898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 156 - 377
Target Start/End: Original strand, 34390 - 34615
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| ||||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||||||||||| ||||||| |||||||||| ||   | |    
34390 acacggtaccaatttgttgtgttaacaaattaaccattttgtggttactctcatccatttgttgtcttaacaaattcatcaaatctgttgtcaacattgg 34489  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgc 351  Q
    |||  || |  |||| ||||||||||||||||||||||||||||| ||    |||||||||| ||||| ||  |||||| ||   ||||||||||||||     
34490 tagggtattccgaccaaaaatgctagaacttgagggactatgtacattgtgcattgtgaacggatttgcttaatctgcaaatctagacgcactattatgt 34589  T
352 acatttgccatcatcgaagttggcat 377  Q
    ||||| ||||||||||||||||||||    
34590 acattggccatcatcgaagttggcat 34615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 161 - 374
Target Start/End: Original strand, 22262987 - 22263204
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa 260  Q
    |||||||||||||| || |||||||| ||||| | ||| |||||||||| |||| |||||||||||| ||||||||||| |||||| || ||| |||||     
22262987 gtaccaatttgttgcgttaacaaattaaccatatcgtggttactctcatccatttgttgtcttaacaaattcatcgaatttgttgtcaacggtggtagag 22263086  T
261 tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt 356  Q
    || |   ||| || |||||||||||||||||||||||||||||    || ||||||| ||||| |||| ||||| |  |||||||||||||||| |||      
22263087 tattccaaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgtcctgcaaaaacggacgcactattatgtacacc 22263186  T
357 tgccatcatcgaagttgg 374  Q
    ||||||| ||||||||||    
22263187 tgccatcgtcgaagttgg 22263204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 12149783 - 12149611
Alignment:
162 taccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaat 261  Q
    |||| |||||||||||||| ||||| |||||||  ||||||||||||| |||| ||||||||||||  ||||| |||||||| ||||||  | ||||| |    
12149783 taccgatttgttgtgtcaataaattaaccatttcatgattactctcatccatttgttgtcttaacaagttcatagaatctgtcgttaagactggtagagt 12149684  T
262 actttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgca 330  Q
    | || |||| |||||||||||||||||| ||||||||| |||    |||||||||| ||||| ||| ||||||    
12149683 atttcgaccaaaaatgctagaacttgagagactatgtatgttgtgcattgtgaacggatttgcttggtctgca 12149611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 161 - 358
Target Start/End: Complemental strand, 18377554 - 18377353
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa 260  Q
    |||||||||||||| || |||||||| | ||||||  | ||||||||||  ||| |||||||||||| ||||||||||| ||||||  | ||| |||||     
18377554 gtaccaatttgttgcgttaacaaattaagcattttaaggttactctcatctatttgttgtcttaacaaattcatcgaatttgttgtctacggtggtagag 18377455  T
261 tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt 356  Q
    || |  |||| ||||||||||||||||||||||||||||||||    |||||||||| ||||| ||| |||| | |   ||| ||||||||||| |||||    
18377454 tattccgaccaaaaatgctagaacttgagggactatgtacgttgtgcattgtgaacggatttgcttggtctgtaaaaaaggaagcactattatgtacatt 18377355  T
357 tg 358  Q
    ||    
18377354 tg 18377353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 303
Target Start/End: Complemental strand, 23011596 - 23011449
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtag 255  Q
    |||| ||| ||||||||||||| ||| |||| ||||| | ||| |||||||||| |||| |||||||||||| ||||||| ||| |||||| || ||| |    
23011596 acacggtatcaatttgttgtgttaacgaattaaccatatcgtggttactctcatccatttgttgtcttaacaaattcatcaaatatgttgtcaacggtgg 23011497  T
256 tagaatactttgaccgaaaatgctagaacttgagggactatgtacgtt 303  Q
    | || || |  |||| || ||| || ||||||||||||||||||||||    
23011496 tcgactattccgaccaaatatgatataacttgagggactatgtacgtt 23011449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 377
Target Start/End: Complemental strand, 50870 - 50650
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa 260  Q
    |||||||||| |||||| |||||||| | ||| |  || |||||||||| ||||  ||||||||||| ||||||| |||||||| | || | | || ||     
50870 gtaccaattttttgtgttaacaaattaatcatatcatggttactctcatccattttttgtcttaacaaattcatcaaatctgttatcaacgatggtggag 50771  T
261 tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt 356  Q
    || |  |||| || |||||||||||||||||||||||||||||    || ||||||| ||||| ||||||| || | ||||| ||||||||||| ||| |    
50770 tattccgaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgttctacaaaagcggatgcactattatgtacact 50671  T
357 tgccatcatcgaagttggcat 377  Q
    ||||||| | |||||||||||    
50670 tgccatcgttgaagttggcat 50650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 161 - 377
Target Start/End: Complemental strand, 55971 - 55751
Alignment:
161 gtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaacagattcatcgaatctgttgttaagggtagtagaa 260  Q
    |||||||||| |||||| |||||||| | ||| |  || |||||||||| ||||  ||||||||||| ||||||| |||||||| | || | | || ||     
55971 gtaccaattttttgtgttaacaaattaatcatatcatggttactctcatccattttttgtcttaacaaattcatcaaatctgttatcaacgatggtggag 55872  T
261 tactttgaccgaaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatt 356  Q
    || |  |||| || |||||||||||||||||||||||||||||    || ||||||| ||||| ||||||| || | ||||| ||||||||||| ||| |    
55871 tattccgaccaaatatgctagaacttgagggactatgtacgttgtgcatggtgaacggatttgcttgttctacaaaagcggatgcactattatgtacact 55772  T
357 tgccatcatcgaagttggcat 377  Q
    ||||||| | |||||||||||    
55771 tgccatcgttgaagttggcat 55751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 77907 - 77798
Alignment:
272 aaaatgctagaacttgagggactatgtacgtt----attgtgaacgaatttgtttgttctgcagatgcggacgcactattatgcacatttgccatcatcg 367  Q
    ||||| ||||||||||||||||||||||| ||    || ||||||| ||||| ||| |||||| |  |||| ||||||||||  |||||| ||||||| |    
77907 aaaatactagaacttgagggactatgtacattgtgcatagtgaacggatttgcttggtctgcaaaaacggaagcactattatatacattttccatcattg 77808  T
368 aagttggcat 377  Q
    ||||||||||    
77807 aagttggcat 77798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 38207 - 38133
Alignment:
304 attgtgaacgaatttgttt--gttctgcagatgcggacgcactattatgcacatttg-ccatcatcgaagttggc 375  Q
    |||||||||| |||||| |  |||||||| |||||||||||||||||||  ||||||  ||||||||||||||||    
38207 attgtgaacggatttgtcttggttctgcaaatgcggacgcactattatgtgcatttgttcatcatcgaagttggc 38133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 226
Target Start/End: Complemental strand, 47217 - 47147
Alignment:
156 acacagtaccaatttgttgtgtcaacaaattgaccattttgtgattactctcatgcattcgttgtcttaac 226  Q
    |||| |||||||||| |||||| |||||||| |||||||  || || ||||||| |||| |||||||||||    
47217 acactgtaccaatttattgtgttaacaaattaaccatttcatggttgctctcatccatttgttgtcttaac 47147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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