View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918_low_1 (Length: 686)

Name: NF2918_low_1
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918_low_1
NF2918_low_1
[»] chr6 (10 HSPs)
chr6 (397-673)||(28525829-28526106)
chr6 (49-259)||(28525484-28525694)
chr6 (116-256)||(28246696-28246836)
chr6 (114-256)||(28191730-28191872)
chr6 (113-256)||(28239703-28239846)
chr6 (111-254)||(28328927-28329070)
chr6 (111-254)||(28506563-28506706)
chr6 (578-632)||(28192193-28192247)
chr6 (51-85)||(28328864-28328898)
chr6 (51-85)||(28506500-28506534)
[»] scaffold0038 (2 HSPs)
scaffold0038 (116-256)||(46858-46998)
scaffold0038 (113-256)||(39865-40008)
[»] scaffold0019 (2 HSPs)
scaffold0019 (113-256)||(54935-55078)
scaffold0019 (397-446)||(54789-54839)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 397 - 673
Target Start/End: Original strand, 28525829 - 28526106
Alignment:
Q  397 gaagacgaccaccat-cacagtagtacaggccaaccacaagaccacccattcgctggtgcaaacattgaaacattttgtcctgatattcgttgaaaaaat 495  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525829 gaagacgaccaccattcacagtagtacaggccaaccacaagaccacccattcgctggtgcaaacattgaaacattttgtcctgatattcgttgaaaaaat 28525928  T
Q  496 tatctctgctgtataataatttgttttggatctggtattcatcttgttaatcatatgtacatttatgatgttgcatgatgtgatacttatgaattattgt 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525929 tatctctgctgtataataatttgttttggatctggtattcatcttgttaatcatatgtacatttatgatgttgcatgatgtgatacttatgaattattgt 28526028  T
Q  596 tttcattacatgcattactatctcttgatgattgagtcnnnnnnntgttgttatattatagtgttacttgtcttctct 673  Q
    ||||||||||||||||||||||||||||||||||||||       |||||| ||||||||||||||||||||||||||    
T  28526029 tttcattacatgcattactatctcttgatgattgagtcaaaaaaatgttgtcatattatagtgttacttgtcttctct 28526106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 28525484 - 28525694
Alignment:
Q  49 catcatcatacatatttgtatgatatggagctggaatattgtttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat 148  Q
    |||||| |||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525484 catcatgatacatgtttgtatgatatgcagctggaatcttttttagacatggacaatgaatattttttagaaaatgactggaatcatgcagagattatat 28525583  T
Q  149 gtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa 248  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525584 gtgaacatcagttagtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacatggatgatattcaattcaccaatccttatgaaaa 28525683  T
Q  249 gataaaatcaa 259  Q
    |||||||||||    
T  28525684 gataaaatcaa 28525694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 28246696 - 28246836
Alignment:
Q  116 tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat 215  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  28246696 tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat 28246795  T
Q  216 ggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28246796 ggatgatattcaattcaccaatccttatgaaaagataaaat 28246836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 114 - 256
Target Start/End: Original strand, 28191730 - 28191872
Alignment:
Q  114 tttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataac 213  Q
    |||||||||||| ||||||||||||||| ||| || |||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28191730 tttagaaaatgaatggaatcatgcagaggttacatatgaacatccgagagtggaaccactaacagaaattggaatccattttttcaaacagaaaaataac 28191829  T
Q  214 atggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  28191830 atggatgatattcaattcaccgatccttataaaaggataaaat 28191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 28239703 - 28239846
Alignment:
Q  113 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 212  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||||   || ||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  28239703 ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa 28239802  T
Q  213 catggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    ||||||||| |||||||||||||||||||| |||| | ||||||    
T  28239803 catggatgacattcaattcaccaatccttaagaaaggttaaaat 28239846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 28328927 - 28329070
Alignment:
Q  111 ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat 210  Q
    |||||||| |||||| |||| |||||||||| ||| ||| ||||||| |  ||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  28328927 ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat 28329026  T
Q  211 aacatggatgatattcaattcaccaatccttatgaaaagataaa 254  Q
    |||||||| || ||| |||||||| |||||||||||||||||||    
T  28329027 aacatggaggacattaaattcaccgatccttatgaaaagataaa 28329070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 111 - 254
Target Start/End: Original strand, 28506563 - 28506706
Alignment:
Q  111 ttttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaat 210  Q
    |||||||| |||||| |||| |||||||||| ||| ||| ||||||| |  ||| |||||| |||||||| |||||||||||||||||||||||||||||    
T  28506563 ttttttagtaaatgaatggattcatgcagaggttagatgggaacatcggggggttgaaccactaacagaatttggaatccattttttcaaacagaaaaat 28506662  T
Q  211 aacatggatgatattcaattcaccaatccttatgaaaagataaa 254  Q
    |||||||| || ||| |||||||| |||||||||||||||||||    
T  28506663 aacatggaggacattaaattcaccgatccttatgaaaagataaa 28506706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 632
Target Start/End: Original strand, 28192193 - 28192247
Alignment:
Q  578 atacttatgaattattgttttcattacatgcattactatctcttgatgattgagt 632  Q
    |||||| |||||||| ||||||||||||| |||| ||||| ||||| ||||||||    
T  28192193 atacttctgaattatagttttcattacatacattgctatcccttgacgattgagt 28192247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 28328864 - 28328898
Alignment:
Q  51 tcatcatacatatttgtatgatatggagctggaat 85  Q
    ||||||||||||||||||||||||| |||||||||    
T  28328864 tcatcatacatatttgtatgatatgaagctggaat 28328898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 28506500 - 28506534
Alignment:
Q  51 tcatcatacatatttgtatgatatggagctggaat 85  Q
    ||||||||||||||||||||||||| |||||||||    
T  28506500 tcatcatacatatttgtatgatatgaagctggaat 28506534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 116 - 256
Target Start/End: Original strand, 46858 - 46998
Alignment:
Q  116 tagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataacat 215  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||    
T  46858 tagaaaatgagtggaatcatgcagagattatatgtgaacatcaggaggtggaaccaataacagaaattggaatccatttttacaaagagcaaaataacat 46957  T
Q  216 ggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46958 ggatgatattcaattcaccaatccttatgaaaagataaaat 46998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 39865 - 40008
Alignment:
Q  113 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 212  Q
    ||||| ||||||| ||||||||||||||| |||||| |||||||   || ||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  39865 ttttaaaaaatgaatggaatcatgcagaggttatatttgaacattcaaatgtggaaccactaacagaaattggaatccattttttcaaacacgaaaataa 39964  T
Q  213 catggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    ||||||||| |||||||||||||||||||| |||| | ||||||    
T  39965 catggatgacattcaattcaccaatccttaagaaaggttaaaat 40008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 55078 - 54935
Alignment:
Q  113 ttttagaaaatgactggaatcatgcagagattatatgtgaacatcagaaggtggaaccaataacagaaattggaatccattttttcaaacagaaaaataa 212  Q
    ||||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55078 ttttagaaaatgaatggatccatgcagaggttacatgtgaacatccgaaggtggaaccactaacagaaattggaatccattttttcaaacagaaaaataa 54979  T
Q  213 catggatgatattcaattcaccaatccttatgaaaagataaaat 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  54978 catggatgatattcaattcaccaatccttatgaaaagataaaat 54935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 54839 - 54789
Alignment:
Q  397 gaagacgaccaccat-cacagtagtacaggccaaccacaagaccacccatt 446  Q
    ||||||||||||||| |||| |||| |||||||| ||||||||||||||||    
T  54839 gaagacgaccaccattcacaatagttcaggccaatcacaagaccacccatt 54789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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