View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_10 (Length: 302)
Name: NF2918_low_10
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_10 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 2326808 - 2327089
Alignment:
| Q |
20 |
tggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccac |
119 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2326808 |
tggagttggagttgccaatggaaaaacggaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccac |
2326907 |
T |
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| Q |
120 |
cgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgt |
219 |
Q |
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||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2326908 |
cgctttgcattggattatggcgaatttggt-gaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgt |
2327006 |
T |
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| Q |
220 |
aaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
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| T |
2327007 |
agagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatc |
2327089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 2330522 - 2330804
Alignment:
| Q |
19 |
atggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttcca |
118 |
Q |
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||||||||||||||||| ||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||||||| | ||| || ||||||||||||| |
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| T |
2330522 |
atggagttggagttgcctcaggagaaacggaaattgagtgaggatgaaatgattagtctttgttcggagtttttgaacggtggcacggatactacttcca |
2330621 |
T |
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| Q |
119 |
ccgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttg |
218 |
Q |
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| T |
2330622 |
ccgctttgcaatggattatggcgaatttggt-gaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctg |
2330720 |
T |
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| Q |
219 |
taaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
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| T |
2330721 |
gagagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatc |
2330804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 2350829 - 2351110
Alignment:
| Q |
20 |
tggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccac |
119 |
Q |
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|||||||||||||||| || |||| ||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
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| T |
2350829 |
tggagttggagttgcctgatgagaaacggaaattgagtgaagatgaaatggttagtctttgttcagagtttttgaatgctgggatagatactacttccac |
2350928 |
T |
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| Q |
120 |
cgctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgt |
219 |
Q |
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|||||||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||||| | |||||||||||||| |||||| ||||||| || |
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| T |
2350929 |
ggctttgcaatggattatggcaaatttg-gtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatgg |
2351027 |
T |
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| Q |
220 |
aaagaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
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| T |
2351028 |
agagaaggtggaagtgaaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatc |
2351110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 2303255 - 2303534
Alignment:
| Q |
22 |
gagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccg |
121 |
Q |
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|||||||||||||| ||| |||| ||||||| |||| |||||||||||| ||||||||| |||||| |||||| ||| || |||||||||||||| |
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| T |
2303255 |
gagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgttcagagtttctgaatggtgggacggatactacttccacta |
2303354 |
T |
|
| Q |
122 |
ctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaa |
221 |
Q |
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||||||| ||||||||||| |||||| || |||||||| || || || |||||||||||| |||||||| ||||||| ||||||||||||| || | |
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| T |
2303355 |
ctttgcaatggattatggcgaatttggtt-aagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggag |
2303453 |
T |
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| Q |
222 |
agaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
2303454 |
agaaggaggaagtgaaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatc |
2303534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 302
Target Start/End: Original strand, 2293663 - 2293921
Alignment:
| Q |
43 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
142 |
Q |
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|||| |||| ||| |||| |||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||||| ||||||||||| | |
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| T |
2293663 |
aaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttgcagtggattatggcga |
2293762 |
T |
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| Q |
143 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagagg |
242 |
Q |
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|| | | |||||||||| || || || ||||||||||| |||||||| ||||||| ||||||||||||| || | ||||||||||||||||||||| |
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| T |
2293763 |
atgt-agtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagagg |
2293861 |
T |
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| Q |
243 |
aagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2293862 |
aagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatc |
2293921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 22 - 302
Target Start/End: Original strand, 2320956 - 2321235
Alignment:
| Q |
22 |
gagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccg |
121 |
Q |
| |
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|||||||||||||| ||| |||| ||||||| |||| |||||||||||| ||||||||||||||||||||| | ||| || |||||||||||||| | |
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| T |
2320956 |
gagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgttcggagtttttgaacggtgggacggatactacttccactg |
2321055 |
T |
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| Q |
122 |
ctttgcattggattatggcaaatttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaa |
221 |
Q |
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||||||| ||||||||||| |||||| ||||||||||||| || || ||||||||||| |||||||| | ||||| |||| | |||||| || | |
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| T |
2321056 |
ctttgcagtggattatggcgaatttg-gtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggag |
2321154 |
T |
|
| Q |
222 |
agaaggaggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||| | |||||||||| |
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| T |
2321155 |
agaaggaggaagtgaaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatc |
2321235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 43 - 302
Target Start/End: Original strand, 2309994 - 2310252
Alignment:
| Q |
43 |
aaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttccaccgctttgcattggattatggcaa |
142 |
Q |
| |
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|||| |||| ||| |||| |||||||||||| ||||||||| ||||||||||| | ||| ||||| ||||||||||| |||| | ||||||||||| | |
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| T |
2309994 |
aaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttccactagtttggagtggattatggcga |
2310093 |
T |
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| Q |
143 |
atttgattgaagtacccggacgttcaaaggaggcttgtgcaggagattagggaggtcatgggtggtgatggtgttgtaaagaaggaggaagtgaaagagg |
242 |
Q |
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|| || | ||||||||| || || | ||||||||||| |||||||| ||||||| ||||||||||||| || | ||||||||||||||||||||| |
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| T |
2310094 |
atgtggt-gaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagagg |
2310192 |
T |
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| Q |
243 |
aagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
| |
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|||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2310193 |
aagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatc |
2310252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 41126832 - 41126919
Alignment:
| Q |
20 |
tggagttggagttgccaatggaaaaacagaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacaga |
107 |
Q |
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|||| ||||||||||| ||| |||| ||| ||| ||| ||||||||||| || |||||||| ||||||||||||||||| ||||| |
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| T |
41126832 |
tggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatggtcagcctttgttcagagtttttgaatgctggcacaga |
41126919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 26494607 - 26494680
Alignment:
| Q |
229 |
ggaagtgaaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttaaggcgtcatc |
302 |
Q |
| |
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|||||||| ||||||||| ||| | ||| | | ||||||||| |||| |||||||||||||||||||||||| |
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| T |
26494607 |
ggaagtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatc |
26494680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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