View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918_low_11 (Length: 295)

Name: NF2918_low_11
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918_low_11
NF2918_low_11
[»] chr2 (6 HSPs)
chr2 (18-127)||(32807509-32807618)
chr2 (157-256)||(32807418-32807514)
chr2 (82-186)||(32815554-32815662)
chr2 (42-135)||(32308774-32308866)
chr2 (150-186)||(32305182-32305218)
chr2 (42-151)||(32807264-32807372)
[»] chr6 (1 HSPs)
chr6 (18-186)||(300929-301096)
[»] chr5 (1 HSPs)
chr5 (82-184)||(31786900-31787002)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 32807618 - 32807509
Alignment:
Q  18 actatcgacgaaacagatttaacaacaactcgtaatagtaattctataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgcg 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32807618 actatcgacgaaatagatttaacaacaactcgtaatagtaattctataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgcg 32807519  T
Q  118 ggtttgaatt 127  Q
    ||||||||||    
T  32807518 ggtttgaatt 32807509  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 32807514 - 32807418
Alignment:
Q  157 tgaattaccccctaagaagattaatctcattgtttagtgaaaacaaggataaaggaccaatattattggaaaaataaataaagaattccaatgttaaatt 256  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||    
T  32807514 tgaattgccccctaagaagattaatatcattgtttagtgaaaacaaggataaaggaccaa---tataggaaaaataaataaagaattccaatgttaaatt 32807418  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 32815662 - 32815554
Alignment:
Q  82 attttgattgattaagtccatatgtgaagaattgcgggtttgaatttttataatgaaaacaaaggtgctagaagatgaa----ttaccccctaagaagat 177  Q
    ||||||||||||| ||||||||  |||||||||| ||||||||||||| || || | |||||||||  ||||||| |||    ||||||| |||||||||    
T  32815662 attttgattgattgagtccataaatgaagaattgagggtttgaattttaatcatcagaacaaaggtagtagaagaagaattacttaccccttaagaagat 32815563  T
Q  178 taatctcat 186  Q
    |||||||||    
T  32815562 taatctcat 32815554  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 32308774 - 32308866
Alignment:
Q  42 acaactcgtaatagtaattctataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgcgggtttgaatttttataat 135  Q
    |||||||| | ||||||||| ||||||||||||| | || |||||||| |||  ||| ||||  |||| ||||||||||||||||||| |||||    
T  32308774 acaactcgcagtagtaattccataacccatcaat-ttattattttgatagatcgagttcataaatgaaaaattgcgggtttgaattttaataat 32308866  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 32305182 - 32305218
Alignment:
Q  150 tagaagatgaattaccccctaagaagattaatctcat 186  Q
    |||||||||||||||||| ||||||||||||||||||    
T  32305182 tagaagatgaattaccccttaagaagattaatctcat 32305218  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 32807372 - 32807264
Alignment:
Q  42 acaactcgtaatagtaattctataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgcgggtttgaatttttataatgaaaac 141  Q
    ||||||||||||||||| || || | ||||| ||| ||| |||| ||||||   |||||||| |||||||| |||| |||| |||||| |||| || ||     
T  32807372 acaactcgtaatagtaactcaattatccatcgatc-cattatttagattgaccgagtccataagtgaagaaatgcgagtttaaattttaataacgagaag 32807274  T
Q  142 aaaggtgcta 151  Q
    ||||||||||    
T  32807273 aaaggtgcta 32807264  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 300929 - 301096
Alignment:
Q  18 actatcgacgaaacagatttaacaacaactcgtaatagtaattctataacccatcaatctcataattttgattgattaagtccatatgtgaagaattgcg 117  Q
    ||||||||||||||||||||||||||   ||||||||||||||| ||||| |||||||| ||| ||||||||||||| |||||||| ||||||||||||     
T  300929 actatcgacgaaacagatttaacaac---tcgtaatagtaattccataactcatcaatc-cattattttgattgattgagtccataagtgaagaattgca 301024  T
Q  118 ggtttgaatttttataatgaaaacaaaggtgctagaagatgaatta---ccccctaagaagattaatctcat 186  Q
      |||||||||| |||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||    
T  301025 tttttgaattttaataatgaaaacaaaggtgctagaagaagaattagttacccttaagaagattaatctcat 301096  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 31786900 - 31787002
Alignment:
Q  82 attttgattgattaagtccatatgtgaagaattgcgggtttgaatttttataatgaaaacaaaggtgctagaagatgaattaccccctaagaagattaat 181  Q
    |||||||||||| |||| | || ||||| |||||||| |||||||||| ||||  | || ||||||| ||||| || | || |||  |||||||||||||    
T  31786900 attttgattgatcaagttcgtaagtgaaaaattgcggttttgaattttaataaaaagaaaaaaggtgttagaatattacttgcccgttaagaagattaat 31786999  T
Q  182 ctc 184  Q
    |||    
T  31787000 ctc 31787002  T

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