View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_2 (Length: 556)
Name: NF2918_low_2
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 48954558 - 48954666
Alignment:
| Q |
230 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatcttcatac |
329 |
Q |
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| T |
48954558 |
tccaatatatatgttaaataaaccaagatttaatctccatactaaaattaaaaccacaataattactaaattagttcttcgttgtcttcaatcttcatac |
48954657 |
T |
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| Q |
330 |
ttgttaggc |
338 |
Q |
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| T |
48954658 |
ttgttaggc |
48954666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 48954472 - 48954553
Alignment:
| Q |
83 |
ctggtttattacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctcggtcctctatatat |
164 |
Q |
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| T |
48954472 |
ctggtttgttacaaagccacgtacgtcagtatcgttttgaagggaaaaaaccttcctttacatagctccgtcctctatatat |
48954553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 48954667 - 48954706
Alignment:
| Q |
498 |
gtgcttgaagaaacttaccttatctctagaacataaagct |
537 |
Q |
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| T |
48954667 |
gtgcttgaagaaacttaccttatctctggaacataaagct |
48954706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 1116587 - 1116469
Alignment:
| Q |
224 |
tcaaaatccaatatatatgttaaataaaccaagatttaatctccatactaaaagtaaaaccacaataattactaaattagttcttcgttgtcttcaatct |
323 |
Q |
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| T |
1116587 |
tcaaaatccaatgtatatgttaaatacaccaaaatttattctccatactaaa-gt-----cacaataatcactaaattagttcttcgttaacttcaatct |
1116494 |
T |
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| Q |
324 |
tcatacttgttaggcttaatttaat |
348 |
Q |
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| T |
1116493 |
tcatacccgttaggcttaatttaat |
1116469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 534
Target Start/End: Complemental strand, 1116424 - 1116337
Alignment:
| Q |
443 |
atatgcaatagatgagatgaaaaatatgccacaacacaaccaaggtaactattgtgtgcttgaagaaacttaccttatctctagaacataaa |
534 |
Q |
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| T |
1116424 |
atatgcattagatgaggtgaaaaatat----caccacagccaaggtaactattgtatgcttaaagaaacttgtcttacctctagaacataaa |
1116337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 302 - 377
Target Start/End: Complemental strand, 24386178 - 24386103
Alignment:
| Q |
302 |
agttcttcgttgtcttcaatcttcatacttgttaggcttaatttaatcaacgataaaatttagaataataataaaa |
377 |
Q |
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| T |
24386178 |
agttcttcattgtcttcaaccttcatacttgttaggcttgatttaactatcaacaaagttttgaataataataaaa |
24386103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 1116764 - 1116678
Alignment:
| Q |
117 |
ttttgaagggaaaaaaccttcctttacatagctcggtcctcta--tatattattccccctacctgaaaataaaagtataaatcataca |
202 |
Q |
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| T |
1116764 |
ttttgaagggaaaaagctatcctttacatagatcaatcctctacatatattattactc-tacctgaaaataaaagtattaatcataca |
1116678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 339
Target Start/End: Original strand, 16153246 - 16153283
Alignment:
| Q |
302 |
agttcttcgttgtcttcaatcttcatacttgttaggct |
339 |
Q |
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| T |
16153246 |
agttcttcattgtcttcaattttcatacttgttaggct |
16153283 |
T |
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