View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_21 (Length: 227)
Name: NF2918_low_21
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 11940284 - 11940502
Alignment:
| Q |
5 |
agtcaagaaaaatggagagaatttcaatggagattattcattcacgttgagatgttaacccccttaattaatgcgggttgcattcatcgtttatcacggg |
104 |
Q |
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| T |
11940284 |
agtcaagaaaaatggagagaattccaatggagattattcattcacgttgagaagttaacccccttaattaatgtgggtttcattcatcgtttatcacgtg |
11940383 |
T |
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| Q |
105 |
aaagttatgaagtattatttaatgggtccttttctcaaactctctctaagtcctataaaatgataggaatgaccctgcctccatcttaactttcacaata |
204 |
Q |
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| T |
11940384 |
aaaattatgaagtattatttaatgggtccttttctcaaactctgcctaagtcctataaaatgataggaatgaccctgcctccatcttaactttcacaata |
11940483 |
T |
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| Q |
205 |
ttcaccctctgtgctcctc |
223 |
Q |
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| T |
11940484 |
ttcaccctttgtgatcctc |
11940502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 5760785 - 5760721
Alignment:
| Q |
109 |
ttatgaagtattatttaatgggtccttttctcaaactctctctaagtcctataaaatgataggaa |
173 |
Q |
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| T |
5760785 |
ttatgaagtattatttaaggggtcattttctcaagctcggcctaagaccaataaaatgataggaa |
5760721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 3096061 - 3096015
Alignment:
| Q |
50 |
gttgagatgttaacccccttaattaatgcgggttgcattcatcgttt |
96 |
Q |
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| T |
3096061 |
gttgagatgtcaaccaccataattaatgcgtgttgcattcatcgttt |
3096015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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