View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_3 (Length: 523)
Name: NF2918_low_3
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 1684852 - 1685228
Alignment:
| Q |
17 |
atttcctccttatgcgaactttatcatgttttgaattttgtttgaaacaagaccttttttgaatttaacacggcaag----------tttacaaagggac |
106 |
Q |
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| T |
1684852 |
atttcctccttatgcgaactttatcatgttttgaattttgtttgaaacaagaccttttttgaatttaacacggcaagccaaggcaagtttacaaagggac |
1684951 |
T |
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| Q |
107 |
cctannnnnnnatattatttgagggtctattttttatcgtcaagtgttgtgcatcattctttctttgtatctgtttcatgcaaagcaaactcgtaacatt |
206 |
Q |
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| T |
1684952 |
cctatttttttattttatttgagggtctattttttatcgtcaagtgctgtgcatcattctttctttgtatctgtttcatgcaaagcaaaatcgtaacatt |
1685051 |
T |
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| Q |
207 |
catctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggtatcgtaattaaaggtgcaaacaaaccctgttgtttatgcataa |
306 |
Q |
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| T |
1685052 |
catctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggtatcgtaattaaaggtgcaaacaaaccctgttgtttatgcataa |
1685151 |
T |
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| Q |
307 |
ctagtgcaaaaaatctgaannnnnnnnnnnnagtcatagtttttgggtgccgcatagggtttgttactctcctccat |
383 |
Q |
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| T |
1685152 |
ctagtgcaaaaaatctgaattttttatttttagtcatagtttttgggtgccgcatagggtttgttactctcctccat |
1685228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 447 - 514
Target Start/End: Original strand, 1685258 - 1685325
Alignment:
| Q |
447 |
atattctccctacaattacctttagaattatttccattttttatttcctttcccatattcttgggatt |
514 |
Q |
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| T |
1685258 |
atattctccctacaattacctttagaattatttccattttttatttcctttcccatattcttgggatt |
1685325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 44923296 - 44923359
Alignment:
| Q |
201 |
aacattcatctactttttataaacttaaaaaatcttgatacccttttgtgataatcgattggta |
264 |
Q |
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| T |
44923296 |
aacattcatctactttctataaacttcaaaaatattgatacccttttgctagaatcgattggta |
44923359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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