View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2918_low_4 (Length: 472)

Name: NF2918_low_4
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2918_low_4
NF2918_low_4
[»] chr1 (2 HSPs)
chr1 (20-449)||(25243817-25244240)
chr1 (360-416)||(20174536-20174592)
[»] chr2 (3 HSPs)
chr2 (159-273)||(22102272-22102386)
chr2 (377-449)||(27166690-27166762)
chr2 (377-439)||(45017919-45017981)
[»] scaffold0313 (1 HSPs)
scaffold0313 (377-449)||(13116-13188)
[»] scaffold0163 (1 HSPs)
scaffold0163 (360-416)||(19091-19147)
[»] scaffold0003 (1 HSPs)
scaffold0003 (377-449)||(148572-148644)
[»] chr5 (2 HSPs)
chr5 (377-449)||(20951420-20951492)
chr5 (377-439)||(19382490-19382552)
[»] chr3 (2 HSPs)
chr3 (360-416)||(2158441-2158497)
chr3 (360-416)||(40090400-40090456)
[»] scaffold0059 (1 HSPs)
scaffold0059 (187-230)||(46930-46973)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 449
Target Start/End: Complemental strand, 25244240 - 25243817
Alignment:
Q  20 ctaccctagtttcacaccccatttggggagtcttcacttttcagtactttgcaggttatcaggtgcttagtcattggaggttccttgggagtgggtggcc 119  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||    
T  25244240 ctaccctaatttcacaccccatttggggagtcttcacttttcaatactttgcaggttgtcaggtgtttagtcattggaggttcattgggagtggatggcc 25244141  T
Q  120 ttgtaggatatgtttattcgttgacttggttttaccatttgaaataccactttcatcacaaaagatcttgaaggatgaattttcaaatccacctctaaaa 219  Q
    ||||||||||||| | || | ||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||| |    
T  25244140 ttgtaggatatgtctctttggtgacttggttttaccatttgaaataccacattcatcacaaaagatctt----gatgaattttcaaatccacctctaaga 25244045  T
Q  220 tcacttcttacataaatgataatagaactattttcaatttgaacctttttacaannnnnnngaaatacttcnnnnnnnggcatctttatttttaaaaata 319  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |       ||||||||||       | ||||||||||||||||||||    
T  25244044 tcacttcttacataaatgatattagaacttttttcaatttgaa-ctttttacgaaaaatttgaaatacttc-aaaagagccatctttatttttaaaaata 25243947  T
Q  320 gcacctagttaatatggatatatcatcatcaacatctgtatttttccactaataccagcagtttgatttggatcaaaaagatcaatgtgaagaagcttca 419  Q
    ||||||| ||||| |||||| ||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||| |||||||||| ||    
T  25243946 gcacctaattaatctggataaatcatcaacaacatctttatttttccactaagaccagcaatttgatttggatcaaaaatatcaatatgaagaagctcca 25243847  T
Q  420 acggtttctgagttcaaatatatttaattg 449  Q
    | |||||| |||||||||||||||||||||    
T  25243846 aaggtttcagagttcaaatatatttaattg 25243817  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 20174592 - 20174536
Alignment:
Q  360 tttttccactaataccagcagtttgatttggatcaaaaagatcaatgtgaagaagct 416  Q
    |||||||||||| || |||||||||| | ||| |||| |||||||||||||||||||    
T  20174592 tttttccactaagactagcagtttgaataggaccaaagagatcaatgtgaagaagct 20174536  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 22102386 - 22102272
Alignment:
Q  159 tgaaataccactttcatcacaaaagatcttgaaggatgaattttcaaatccacctctaaaatcacttcttacataaatgataatagaactattttcaatt 258  Q
    ||||||||||| ||||||| | ||  |||||||||||| |||||||||| |||||| |  |||||| ||||||   |||||| ||||||| || ||| ||    
T  22102386 tgaaataccacattcatcaaagaaagtcttgaaggatgcattttcaaattcacctccatgatcactccttacagctatgatattagaacttttctcattt 22102287  T
Q  259 tgaacctttttacaa 273  Q
    |||||||||||||||    
T  22102286 tgaacctttttacaa 22102272  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 449
Target Start/End: Original strand, 27166690 - 27166762
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaatatatttaattg 449  Q
    |||||||||  |||| |||| ||||||||||||||||| | ||| |||||||||||| ||||| ||| |||||    
T  27166690 gcagtttgaactggaccaaagagatcaatgtgaagaagttccaaaggtttctgagttgaaataaattcaattg 27166762  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 45017981 - 45017919
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaata 439  Q
    |||||||||  |||| |||| |||||||| ||||||||||| || |||||||||||| |||||    
T  45017981 gcagtttgaactggaccaaagagatcaatatgaagaagctttaaaggtttctgagttgaaata 45017919  T

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Target: scaffold0313 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 13188 - 13116
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaatatatttaattg 449  Q
    |||||||||  |||| ||||||||||||||||||||||||  || |||||||||||| ||||| ||| |||||    
T  13188 gcagtttgaactggaccaaaaagatcaatgtgaagaagctctaaaggtttctgagttgaaataaattcaattg 13116  T

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Target: scaffold0163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 19147 - 19091
Alignment:
Q  360 tttttccactaataccagcagtttgatttggatcaaaaagatcaatgtgaagaagct 416  Q
    |||||||||||| || |||||||||| | ||| |||| |||||||||||||||||||    
T  19147 tttttccactaagactagcagtttgaataggaccaaagagatcaatgtgaagaagct 19091  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 148644 - 148572
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaatatatttaattg 449  Q
    |||||||||  |||| |||| |||||||||||||||||||  || |||||||||||| ||||| ||| |||||    
T  148644 gcagtttgaactggaccaaagagatcaatgtgaagaagctctaaaggtttctgagttgaaataaattcaattg 148572  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 20951492 - 20951420
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaatatatttaattg 449  Q
    |||||||||  |||| |||| ||||||||||||||||| | ||| |||||||||||| ||||| ||| |||||    
T  20951492 gcagtttgaactggaccaaagagatcaatgtgaagaagttccaaaggtttctgagttgaaataaattcaattg 20951420  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 19382490 - 19382552
Alignment:
Q  377 gcagtttgatttggatcaaaaagatcaatgtgaagaagcttcaacggtttctgagttcaaata 439  Q
    |||||||||  |||| |||| |||||||||||||||||||  || |||||||||||| |||||    
T  19382490 gcagtttgaactggaccaaagagatcaatgtgaagaagctctaaaggtttctgagttgaaata 19382552  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 2158497 - 2158441
Alignment:
Q  360 tttttccactaataccagcagtttgatttggatcaaaaagatcaatgtgaagaagct 416  Q
    |||||||||||| || |||||||||| | ||| |||| |||||||||||||||||||    
T  2158497 tttttccactaagactagcagtttgaataggaccaaagagatcaatgtgaagaagct 2158441  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 40090400 - 40090456
Alignment:
Q  360 tttttccactaataccagcagtttgatttggatcaaaaagatcaatgtgaagaagct 416  Q
    |||||||||||| || |||||||||| | ||| |||| |||||||||||||||||||    
T  40090400 tttttccactaagactagcagtttgaataggaccaaagagatcaatgtgaagaagct 40090456  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 46930 - 46973
Alignment:
Q  187 ttgaaggatgaattttcaaatccacctctaaaatcacttcttac 230  Q
    |||||||||| |||||||||| |||||||| |||||||||||||    
T  46930 ttgaaggatgcattttcaaattcacctctataatcacttcttac 46973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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