View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_5 (Length: 440)
Name: NF2918_low_5
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 38674129 - 38674554
Alignment:
| Q |
1 |
tacactatttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgtgtttggagtccaagttattgctattcaaaattttc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
38674129 |
tacactgtttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgggtttggagtccaagttattgctattcaaatttttc |
38674228 |
T |
|
| Q |
101 |
aatattcaaaagccttcaaagtcaaagtaaaacaataaacacttcaaattccactcc-ctatatatatgagttgtgcca-cccctcattccatcaaaaca |
198 |
Q |
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|||||||||||||||||| |||||||| ||||||||||||| || ||||||||||| ||||||| ||||||| ||||| |||||| || |||||||||| |
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| T |
38674229 |
aatattcaaaagccttcacagtcaaagcaaaacaataaaca-ttttaattccactcctctatataaatgagttatgccaccccctcctttcatcaaaaca |
38674327 |
T |
|
| Q |
199 |
catcaacatatcacaatttaatttc-----atcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagat |
293 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
38674328 |
cattaacatatcacaatttaatttcatcatatcatatcatatcatatagtttgtgagaatta--ataaactccttcaaagcacaacaacagttcatagat |
38674425 |
T |
|
| Q |
294 |
tgatattagttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacata |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38674426 |
tgatattagttgaatcaaacaaacatacatggctttctcttatagtagaataatcc---tcttcaaagttcttctctatgtactaatcatcttcaacata |
38674522 |
T |
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| Q |
394 |
ttcgttacacctcaatcaggaggagtagattg |
425 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
38674523 |
ttcgttacacctcaatcaggaggagtagattg |
38674554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 2 - 425
Target Start/End: Original strand, 38666388 - 38666803
Alignment:
| Q |
2 |
acactatttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgtgtttggagtccaagttattgctattcaaaattttca |
101 |
Q |
| |
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||||| |||||||||||||||||| | ||||||||| ||||| || ||||||||||||| |||||||||||||||| ||||||||||| || |||||| |
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| T |
38666388 |
acactgtttactctttcttgttcaatattttgacatagtcatgttttagtgatatgggt---gtgtttggagtccaaggtattgctattccaatttttca |
38666484 |
T |
|
| Q |
102 |
atattcaaaagccttcaaagtcaaagtaaaacaataaacacttcaaattccactcc-ctatatatatgagttgtgccacccc-tcattccatcaaaacac |
199 |
Q |
| |
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||||||||| | |||| |||||||| ||||||||||||| || || ||||||||| ||||||| ||||||| ||||||||| || || ||||||||||| |
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| T |
38666485 |
atattcaaac-ctttcacagtcaaagcaaaacaataaacattttaa-ttccactcctctatataaatgagttatgccaccccctcctttcatcaaaacac |
38666582 |
T |
|
| Q |
200 |
atcaacatatcacaatttaatttcatcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagattgatat |
299 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
38666583 |
attaacatatcacaatttaatttcatcatatcatatcatatagtttgtgagaattaata--aactccttcaaagcacaacaacagttcatagattgatat |
38666680 |
T |
|
| Q |
300 |
tagttgaatcaaacaaacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgtt |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38666681 |
tagttgaatcaaacaaacatacatggctttctcttatagtagaataatcc---tcttcaaagttcttctctatgtactaatcatcttcaacatattcgtt |
38666777 |
T |
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| Q |
400 |
acacctcaatcaggaggagtagattg |
425 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
38666778 |
acacctcaatcaggaggagtagattg |
38666803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 115 - 425
Target Start/End: Complemental strand, 38669171 - 38668868
Alignment:
| Q |
115 |
ttcaaagtcaaagtaaaacaataaacacttcaaattccactccctatatatatgagttgtgccacccctcattccatcaaaacacatcaacatatcacaa |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
38669171 |
ttcaaagtcaaagtaaaacaataaacacttcaaattccactccctatatatatgagttg--ccacccctccttccatcaaaacacattaacatatcacaa |
38669074 |
T |
|
| Q |
215 |
tttaatttcatcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagattgatattagttgaatcaaaca |
314 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38669073 |
tttaatttcatcatatcatatcatatagtttgtgagaattaata--aactccttcaaagcacaacaacagttcatagattgatattagttgaatcaaaca |
38668976 |
T |
|
| Q |
315 |
aacatacatggctttctcttatagtagaataatcctcttcttcaaagttcttctctatgtactaatcatcttcaacatattcgttacacctcaatcagga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38668975 |
aacatacatggctttctcttatagtagaataatcct---cttcaaagttcttctctatgtactaatcatcttcaacatattcgttacacctcaatcagga |
38668879 |
T |
|
| Q |
415 |
ggagtagattg |
425 |
Q |
| |
|
||||||||||| |
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|
| T |
38668878 |
ggagtagattg |
38668868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 38669273 - 38669218
Alignment:
| Q |
9 |
ttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcg |
64 |
Q |
| |
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||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||| |
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| T |
38669273 |
ttactctttcttgttcaattttttgacatggtcgtgttttagtgttatgggtcgcg |
38669218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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