View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2918_low_7 (Length: 396)
Name: NF2918_low_7
Description: NF2918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2918_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 32313861 - 32314247
Alignment:
| Q |
1 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
100 |
Q |
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| T |
32313861 |
gcttgtatgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatat |
32313960 |
T |
|
| Q |
101 |
gaggttagtatctgatatttccctcatttatttcaccactgaactgattcacatataatttcttgtgtttaaatctatatggagnnnnnnnnatt----- |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
32313961 |
gaggttagtatctgatatttccctcatttatttcaccactgaactgattcacatataatttcttgtgtttaaatctatatggtggtgttgttttttttaa |
32314060 |
T |
|
| Q |
196 |
-atacatgatatttctatttctattattaggctgcttcagccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaact |
294 |
Q |
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| T |
32314061 |
tatacatgatatttctatttctattattaggctgcttccgccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaact |
32314160 |
T |
|
| Q |
295 |
tctctgtcttctactatgagataatgaactctcctgaaaggcaagttactttacttacactctttattagcttttgggctcaaatgt |
381 |
Q |
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| T |
32314161 |
tctctgtcttctactatgagataatgaactctcctgaaaggcaagttactttacttacactctttattagcttttgggctcaaatgt |
32314247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 19415802 - 19415925
Alignment:
| Q |
217 |
attattaggctgcttcagccactgcaagcacagatcttccatcaacacatccaatccgtcttggacttgcactcaacttctctgtcttctactatgagat |
316 |
Q |
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| T |
19415802 |
attattaggctgcttccgccactgcaaacactgatcttccatcaacacatccaatccgtcttggacttgcactcaacttctctgtcttttattatgagat |
19415901 |
T |
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| Q |
317 |
aatgaactctcctgaaaggcaagt |
340 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
19415902 |
tatgaactctcctgaaaggtaagt |
19415925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 19415613 - 19415716
Alignment:
| Q |
8 |
tgatccaggaaaggtgactattatcgatatcttgctgagttcaagaacgatcaagataggaaggaggcagctgatcagtcactgaaggcatatgaggtta |
107 |
Q |
| |
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|||| |||||||||||| |||| || ||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||||| | ||| |||||| |
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| T |
19415613 |
tgattcaggaaaggtgattatttccggtatcttgctgagttcaagactgaccaagaaagaaaagaggctgctgagcagtcactgaaaggatacgaggttt |
19415712 |
T |
|
| Q |
108 |
gtat |
111 |
Q |
| |
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|||| |
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| T |
19415713 |
gtat |
19415716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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