View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2919_high_5 (Length: 262)
Name: NF2919_high_5
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 5268883 - 5269100
Alignment:
| Q |
4 |
atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt |
103 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5268883 |
atgtctaataatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgt |
5268982 |
T |
|
| Q |
104 |
tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcac |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5268983 |
tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttaaaaatactctgtttttcattcac |
5269082 |
T |
|
| Q |
204 |
tcgatattctgaatatta |
221 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
5269083 |
tcgatattctgaatatta |
5269100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 5249648 - 5249798
Alignment:
| Q |
4 |
atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt |
103 |
Q |
| |
|
||||| || |||||||| ||||||| || || ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||| |
|
|
| T |
5249648 |
atgtctaataatattgttgtagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgt |
5249747 |
T |
|
| Q |
104 |
tcaatcaactccttcccactatgcctttcaattctctcatggtatgttttt |
154 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5249748 |
tcaatcagctccttcccactatgccttggaattctctcatggtatgttttt |
5249798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 4 - 168
Target Start/End: Complemental strand, 5272900 - 5272736
Alignment:
| Q |
4 |
atgtcgaagaatattgtgatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgt |
103 |
Q |
| |
|
||||| || |||||||| || |||| ||||| || |||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||||||| |
|
|
| T |
5272900 |
atgtctaataatattgttattatttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgt |
5272801 |
T |
|
| Q |
104 |
tcaatcaactccttcccactatgcctttcaattctctcatggtatgtttttcactcttttcatat |
168 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||| ||||||||||||||| | ||| ||||||| |
|
|
| T |
5272800 |
tcaatcagctccttcccacaatgccttggaattccgtcatggtatgttttttattctcttcatat |
5272736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 5276835 - 5276673
Alignment:
| Q |
40 |
aaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctc |
139 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||||| |
|
|
| T |
5276835 |
aaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctg |
5276736 |
T |
|
| Q |
140 |
tcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattca |
202 |
Q |
| |
|
| |||||||| |||| | || |||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
5276735 |
ttatggtatgctttttattcctttcatgtgctctgttttgtaaaatactctgtttttcattca |
5276673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 5269116 - 5269154
Alignment:
| Q |
218 |
attaacttgtgttttggttttggaaatacaggacagaat |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5269116 |
attaacttgtgttttggttttggaaatacaggacagaat |
5269154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 19569150 - 19569249
Alignment:
| Q |
37 |
gataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaatt |
136 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19569150 |
gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttcaatt |
19569249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 147
Target Start/End: Complemental strand, 26315844 - 26315722
Alignment:
| Q |
25 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
124 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||| || ||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||| | |
|
|
| T |
26315844 |
gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccacca |
26315745 |
T |
|
| Q |
125 |
tgcctttcaattctctcatggta |
147 |
Q |
| |
|
|||| || || | |||||||||| |
|
|
| T |
26315744 |
tgccattgaactatctcatggta |
26315722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 43110952 - 43110849
Alignment:
| Q |
25 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
124 |
Q |
| |
|
||||| ||||| || ||||||||| |||| ||||| |||||||| |||||| |||||||||| |||||||| |||||||||||| |||| ||||||| | |
|
|
| T |
43110952 |
gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccacca |
43110853 |
T |
|
| Q |
125 |
tgcc |
128 |
Q |
| |
|
|||| |
|
|
| T |
43110852 |
tgcc |
43110849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
| Q |
49 |
attgattgtgatagtgataattgggttcttgatgaattaggttt |
92 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggttt |
43105420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University