View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2919_high_6 (Length: 257)
Name: NF2919_high_6
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5032018 - 5032256
Alignment:
| Q |
1 |
tgaacttaaacttttttcaaattcatcaaagcatatgtcaaaaatttgtaattgtgtgaggttgtttaggatcaatgtttacgaattaaaatgctgccaa |
100 |
Q |
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| T |
5032018 |
tgaacttaaactcttttcaaattcatcaaagcatatgtcaaaaatttgtaattgtgtgaggttgtttaggatcaatgtttacgaattaaaatgttgccaa |
5032117 |
T |
|
| Q |
101 |
actgacatttttatgttattattatggtgtgtttctaacatttatctataattttggtgaaattcgtgagaattttagtcaataaaaaagaatgtgttat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5032118 |
actgacgtttttatgttattattatggtgtgtttctaatatttatctataattttggtgaaattcgtgagaattttagtcaataaaaaagaatgtgttat |
5032217 |
T |
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| Q |
201 |
gatgtgtattagaaagtgtttacaacatttttgtttgaa |
239 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
5032218 |
gatgtgtatttaaaagtgtttacaacatttttgtttgaa |
5032256 |
T |
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