View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2919_low_2 (Length: 405)
Name: NF2919_low_2
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 6663581 - 6663193
Alignment:
| Q |
19 |
caaaaagggtgatgatgttaaggtgaataatagtgatgtaaaggcggataaaagtgataataaggttaaaactggtggtgg---------------tgat |
103 |
Q |
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| T |
6663581 |
caaaaagggtgatgatgttaaggtgaataacagtgatgtaaagacggataaaagtgataataaggttaaaactggtggtggaggtggtggtggtggtgat |
6663482 |
T |
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| Q |
104 |
tctagggtttgggctgttcaggatttgtattcgaagtatccgactatatgtcgaggttatgcgtcgggattgtataatcttgcttgggcacaagctgttc |
203 |
Q |
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| T |
6663481 |
tctagggtttgggctgttcaggatttgtattcgaagtatccgactatatgtcgaggttatgcgtcgggattgtataatcttgcttgggcacaagctgttc |
6663382 |
T |
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| Q |
204 |
agaataagcctttgaatgatatttttgttatggaacttgataaaaatgctaatgctaatagtaacaatagtgggaacaaagatggtgagttgaataagtc |
303 |
Q |
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| T |
6663381 |
agaacaagcctttgaatgatatttttgttatggaacttgataaaaatgctaatgctaatagtaacaatagtgggaacaaagatggtgagttgaataagtc |
6663282 |
T |
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| Q |
304 |
gtcgaaggagattgttgtagtgnnnnnnnnnnnnnnnnnaaaagaggaaggggaattggaggagggtgagattgatggtgatgctgatgatg |
395 |
Q |
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| T |
6663281 |
gtcgaaggagattgttgtagtg---gatgatgatgatgaaaaagaggaaggggagttggaggagggtgagattgatggtgatgctgatgatg |
6663193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 46674791 - 46674823
Alignment:
| Q |
20 |
aaaaagggtgatgatgttaaggtgaataatagt |
52 |
Q |
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| T |
46674791 |
aaaaagggtgatgatgttaaggtgaataatagt |
46674823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 49315434 - 49315357
Alignment:
| Q |
170 |
ggattgtataatcttgcttgggcacaagctgttcagaataagcctttgaatgatatttttgttatggaacttgataaa |
247 |
Q |
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| T |
49315434 |
ggattgtataatcttgcttgggcacaggctgttcagaataagcctttgaatgatatttttgctatggaaattgataaa |
49315357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 5687434 - 5687401
Alignment:
| Q |
19 |
caaaaagggtgatgatgttaaggtgaataatagt |
52 |
Q |
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| T |
5687434 |
caaaaagggtgatgatgttaaggtgaataatagt |
5687401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 49315260 - 49315224
Alignment:
| Q |
344 |
aaagaggaaggggaattggaggagggtgagattgatg |
380 |
Q |
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| T |
49315260 |
aaagaggaaggggagttggaggagggtgagattgatg |
49315224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 31625240 - 31625273
Alignment:
| Q |
19 |
caaaaagggtgatgatgttaaggtgaataatagt |
52 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
31625240 |
caaaaagggtgatgatgttaaggtgaataatagt |
31625273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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