View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2919_low_3 (Length: 383)
Name: NF2919_low_3
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 7292173 - 7292530
Alignment:
| Q |
19 |
ctaatgcaccctgcaacatcatattcattatcataatcactttcatcattagaagtatttgattctgtttcaaacaactcaatgtgattgatgacaaacg |
118 |
Q |
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| T |
7292173 |
ctaatgcaccctgcaacatcatattcattatcataatcactttcatcattagaagtatttgattctgtttcaaacaactcaatgtgattgatgacaaacg |
7292272 |
T |
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| Q |
119 |
atccttcattgagaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtattcacttcatcttcccttataatcccctgtag |
218 |
Q |
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| T |
7292273 |
atccttcattgacaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtattcacttgatcttcccttataatcccctgtag |
7292372 |
T |
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| Q |
219 |
catacaatattaaggacaaacacaaataattttcctatataactcatttttcatataggaaaatgatgtctatacctgcaacaccatatcattaagagca |
318 |
Q |
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| T |
7292373 |
catacaatattaaggacaaacacaaataattttcctatataactcatttttcatataggaaaatgatgtctatacctgcaacaccatatcattaagagca |
7292472 |
T |
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| Q |
319 |
gtagccaaaaaatcccaatcgtcgcaacaatattccacgtcacatggatcttcatttc |
376 |
Q |
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| T |
7292473 |
gtagccaaaaaatcccaatcgtcgcaacaatattccacgtcacatggatcttcatttc |
7292530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 7297132 - 7297270
Alignment:
| Q |
87 |
ttcaaacaactcaatgtgattgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagta |
186 |
Q |
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| T |
7297132 |
ttcaaacaactccaaacgattgatggcaaatgatccttcattgagaacttctaactcaacttcatatggtgatggataatattgagggacattaaaagta |
7297231 |
T |
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| Q |
187 |
ttcacttcatcttcccttataatcccctgtagcatacaa |
225 |
Q |
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| T |
7297232 |
ttcacttgatcttcctttataatcccctgttgcatacaa |
7297270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 376
Target Start/End: Original strand, 7297497 - 7297565
Alignment:
| Q |
308 |
cattaagagcagtagccaaaaaatcccaatcgtcgcaacaatattccacgtcacatggatcttcatttc |
376 |
Q |
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| T |
7297497 |
cattaagaacagcagctaaaagctcccaatagtagcaacaatattttatgtcacatggatcttcatttc |
7297565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 27736051 - 27736134
Alignment:
| Q |
105 |
attgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagtgcgggatgttaaaagtatt |
188 |
Q |
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| T |
27736051 |
attgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatggataataattagggatgttgaaagtatt |
27736134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 20117995 - 20117929
Alignment:
| Q |
103 |
tgattgatgacaaacgatccttcattgagaacttccaattccacttcattcggagacggataatagt |
169 |
Q |
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| T |
20117995 |
tgatcgatgacaaatgacccttcagttagaacttccaatttcacttcagttggagatggataatagt |
20117929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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