View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2919_low_4 (Length: 368)
Name: NF2919_low_4
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 124 - 353
Target Start/End: Complemental strand, 19768956 - 19768727
Alignment:
| Q |
124 |
tgttatagtttcttctatagcaaaagagatgacaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
223 |
Q |
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| T |
19768956 |
tgttatagtttcttctatagcaaaatagatgagaaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagct |
19768857 |
T |
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| Q |
224 |
-caaacaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattcattgacggataggttccacaac |
322 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
19768856 |
aaaaaaaaaatcagcttctcaaatttctccttctcagtttgcacatgatttaaggttcctct-ccctgcctcaaattcattgacggataggttccacaac |
19768758 |
T |
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| Q |
323 |
gataatggctaaacaacatgcaccattttct |
353 |
Q |
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| T |
19768757 |
gataatggctaaacaacatgcaccattttct |
19768727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 56 - 276
Target Start/End: Complemental strand, 29199369 - 29199150
Alignment:
| Q |
56 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
155 |
Q |
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| T |
29199369 |
gtgaacaatttcaatatagataaatctaaagagaaaaaa-tatgaataagagaacatgacgatccaactgttctagtttcttctatagcaaaatagatga |
29199271 |
T |
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| Q |
156 |
caaagaaacaaataaaagtggaagaagaaaatttacccataagaacctttctccgtcagattcaagctcaaacaaaatcagcttctcaaatttctccttc |
255 |
Q |
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| T |
29199270 |
gaaagaaacaaataaaagtggaagaagaaactttatccataagaacctttctccgtcagattcaaattcaaacaaaatcagcttctcaaatttctccttc |
29199171 |
T |
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| Q |
256 |
tcagtttgcacatgatttaag |
276 |
Q |
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||| ||||||||||||||||| |
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| T |
29199170 |
tcattttgcacatgatttaag |
29199150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 25901099 - 25901225
Alignment:
| Q |
56 |
gtgaacaatttcaatatagataaatctcaagagnnnnnnntatgaataagagaacatgaagatccaactgttatagtttcttctatagcaaaagagatga |
155 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| || || ||||||||||||| |||||| |||||| |
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| T |
25901099 |
gtgaacaatttcaatgtagataaatctcaagagaaaaag-tatgaataagagaacatgaagacccatctattctagtttcttctatggcaaaatagatga |
25901197 |
T |
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| Q |
156 |
caaagaaacaaataaaagtggaagaaga |
183 |
Q |
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| T |
25901198 |
gaaagaaacaaataaaagtggaagaaga |
25901225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 5478268 - 5478209
Alignment:
| Q |
241 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
300 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
5478268 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
5478209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 50227374 - 50227416
Alignment:
| Q |
160 |
gaaacaaataaaagtggaagaagaaaatttacccataagaacc |
202 |
Q |
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| T |
50227374 |
gaaacaaataaaagtgaaagaagaaactttacccataagaacc |
50227416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 2685044 - 2685103
Alignment:
| Q |
241 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
300 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
2685044 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
2685103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 6174364 - 6174412
Alignment:
| Q |
12 |
catcatcacaggaaaacttttgtctctgttgaaaggcgagaaaagtgaa |
60 |
Q |
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| T |
6174364 |
catcatcactggaaaacttttgtctctgttgaaaggtgagaaaagtgaa |
6174412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 45008469 - 45008528
Alignment:
| Q |
241 |
tcaaatttctccttctcagtttgcacatgatttaaggttcccctcccctgcctcaaattc |
300 |
Q |
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|||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||| |
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| T |
45008469 |
tcaaatttctccttctcattttgcacatgatttgaggttccactcccctccctcaaattc |
45008528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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