View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2919_low_5 (Length: 337)
Name: NF2919_low_5
Description: NF2919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2919_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 3 - 323
Target Start/End: Original strand, 14379749 - 14380069
Alignment:
| Q |
3 |
gagatggacatcatcacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtaaatttacaactcaacaaacttcggatgcg |
102 |
Q |
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| T |
14379749 |
gagatagacatcataacgcttgtttgatgcagcaactatttgaccaacttctactaattagagttttggtcaatttacaactcaacaaacttcggatgcg |
14379848 |
T |
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| Q |
103 |
agaaataaaatcaacctacataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcg |
202 |
Q |
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| T |
14379849 |
agaaataaaatcaacctatataaccaaacatgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcg |
14379948 |
T |
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| Q |
203 |
caaacctcataattgttgtagtcaaggtgagtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcac |
302 |
Q |
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| T |
14379949 |
caaacctcataattgttgtagtcaaggtgagtaagaaaactcaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcac |
14380048 |
T |
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| Q |
303 |
aattaagctctagcaagaggt |
323 |
Q |
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| T |
14380049 |
aattaagctctagcaagaggt |
14380069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 14246463 - 14246168
Alignment:
| Q |
34 |
gcaactatttgaccaacttctactaattagagttttggtaaatttacaactcaacaaacttcgg-atgcgagaaataaaatcaacctacataaccaaaca |
132 |
Q |
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| T |
14246463 |
gcaactatttgatctacttctattaattagagttttggagaatttacagctcagcggacattggcacacgaaaaatacaatcaactcacataaccaaaca |
14246364 |
T |
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| Q |
133 |
tgacattacttgctctttgccaggggcaatatgcaacaagtacgacactaatgcacaaacataaatggcgcaaacctcataattgttgtagtcaaggtga |
232 |
Q |
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| T |
14246363 |
tgacattacgtgctctttgctaggagaaatatgcaacaagaacgacactgatgcacaaacataaatggggcaaacatcgtaattgtcgtattcaaggtga |
14246264 |
T |
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| Q |
233 |
gtaagaaaacccaacccattagaggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattaagctctagcaagaggtgatga |
328 |
Q |
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| T |
14246263 |
gtaagaaaactcaacccattacgggttcatgattcccacaaatagcattgacaattgaatcaccagtcacaattgagctctggcgagaggtaatga |
14246168 |
T |
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