View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2920_high_2 (Length: 462)
Name: NF2920_high_2
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2920_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 36891780 - 36892210
Alignment:
| Q |
18 |
gaaacagcatgatacagaagatccatcaaacgatacagagaaatatccggttggatttttgccaccaaattatgaaacctttcatcaatttgtcaagtct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891780 |
gaaacagcatgatacagaagatccatcaaacgatacagagaaatatccggttggatttttgccaccaaattatgaaacctttcatcaatttgtcaagtct |
36891879 |
T |
|
| Q |
118 |
gcatatgtacatactcttggcctttcaggagtaggtatgtcttctccatactagttggctacatttgtctaagtgatatattttcatgggattaattttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36891880 |
gcatatgtacatactcttggcctttcaggagtaggtatgtcttctccatactagttggctacatttgtctaagtgatatattttcatgggattaattttt |
36891979 |
T |
|
| Q |
218 |
atgcactaacatcataaaactctatttacacaaagtaagatgtcatttcgttaaacaactgatagagtcnnnnnnntattactgaaaaagtgtatagaaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
36891980 |
atgcactaacatcataaaactctatttacacaaagtatgatgtcgtttcgttaaacaactgatagagtcaaaaaaatattactgtaaaagtgtatagaaa |
36892079 |
T |
|
| Q |
318 |
caaaatcttatttctctataagatatgtatgttgtgacgataatttaacacgattaactaattaattggacaatggtcctttttcaatgaatgtttctta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892080 |
caaaatcttatttctctataagatatgtatgttgtgacgataatttaacacgattaactaattaattggacaatggtcctttttcaatgaatgtttctta |
36892179 |
T |
|
| Q |
418 |
aatttataagagttaaaggatgtaaagattg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
36892180 |
aatttataagagttaaaggatgtaaagattg |
36892210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 36879502 - 36879625
Alignment:
| Q |
33 |
agaagatccatcaaacgatacagagaaatatccggttggatttttgccaccaaattatgaaacctttcatcaatttgtcaagtctgcatatgtacatact |
132 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||| |||||||| ||| |
|
|
| T |
36879502 |
agaagatccatcaaacaaatcagagaaatatcctgttggatttttgccaaaaaattatgaaacctttcttgaatttgtcaagtctgcgtatgtacacact |
36879601 |
T |
|
| Q |
133 |
cttggcctttcaggagtaggtatg |
156 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36879602 |
cttggcctttcaggagtaggtatg |
36879625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University