View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2920_high_3 (Length: 436)
Name: NF2920_high_3
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2920_high_3 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 48650742 - 48651171
Alignment:
| Q |
1 |
caccaaacacatcaatatcattatgccccatccatcactcctactacaggttaatagtacccttttataaattaatctcatccgtaaatatttattttta |
100 |
Q |
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| T |
48650742 |
caccaaactcatcaatatcattatgccccatccatcactcctactacaggttaatattacccttttataaattaatctcatccgtaaatatttattttta |
48650841 |
T |
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| Q |
101 |
caagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaaagtgacagtttgtctttgtgggtgtggaat |
200 |
Q |
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| T |
48650842 |
caagaaacatgtccgaacttttgtatgtaaccttgaagatttgtttattgattttatgtatgtattttaaagtgacagtttgtctttgtgggtgtggaat |
48650941 |
T |
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| Q |
201 |
attgataggtacagttagcacgggtgaatgcttcaaaagggtagtggtctgagtcagagtcaaagtcagagtcaaaggagagggacgtgatcgtgaatgc |
300 |
Q |
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| T |
48650942 |
attgataggtacagttggcacgggtgaatgcttcaaaagggtagtggtctgagtcag------agtcagagtcaaaggagagggacgtgatcgtgaatgc |
48651035 |
T |
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| Q |
301 |
acgcagctacattattatttcatctgttctgcatctgcattcggattctttattatgtatttttaatcctaggtgtttcatttcattcatcagattcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48651036 |
acgcagctacattattatttcatctgttctgcatctgcattcggattctttattat-tatttttaatcctaggtgtttcatttcattcatcatattcttt |
48651134 |
T |
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| Q |
401 |
ctttcattatctctc-taacttctcagcgtgagctgt |
436 |
Q |
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| T |
48651135 |
ctttcattatctctcttaacttctcagcgtgagctgt |
48651171 |
T |
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