View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2920_low_10 (Length: 311)

Name: NF2920_low_10
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2920_low_10
NF2920_low_10
[»] chr3 (2 HSPs)
chr3 (68-226)||(2571450-2571608)
chr3 (1-64)||(2571193-2571256)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 68 - 226
Target Start/End: Original strand, 2571450 - 2571608
Alignment:
68 tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2571450 tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac 2571549  T
168 cacctttcattatacttccnnnnnnncatgtcaccttcactttcccttctccttttcat 226  Q
    |||||||||||| ||||||       |||||||||||||||||||||||||||||||||    
2571550 cacctttcattaaacttccaaaaaaacatgtcaccttcactttcccttctccttttcat 2571608  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2571193 - 2571256
Alignment:
1 aaaaaattaataacacattgaagagtgacaatgttattttccaaataaactatttagagatagg 64  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
2571193 aaaaaattaataacacattgaagactgacaatgttatttttcaaataaactatttagagatagg 2571256  T

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