View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2920_low_10 (Length: 311)
Name: NF2920_low_10
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2920_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 68 - 226
Target Start/End: Original strand, 2571450 - 2571608
Alignment:
| Q |
68 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
167 |
Q |
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| T |
2571450 |
tatttatttatctcaacaacttcgtctatgtgcctataaattcctagtactaccattattcctaaacacatcccacaagcaaaataacacatactcaaac |
2571549 |
T |
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| Q |
168 |
cacctttcattatacttccnnnnnnncatgtcaccttcactttcccttctccttttcat |
226 |
Q |
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| T |
2571550 |
cacctttcattaaacttccaaaaaaacatgtcaccttcactttcccttctccttttcat |
2571608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2571193 - 2571256
Alignment:
| Q |
1 |
aaaaaattaataacacattgaagagtgacaatgttattttccaaataaactatttagagatagg |
64 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
2571193 |
aaaaaattaataacacattgaagactgacaatgttatttttcaaataaactatttagagatagg |
2571256 |
T |
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