View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2920_low_2 (Length: 472)
Name: NF2920_low_2
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2920_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Original strand, 3030541 - 3030993
Alignment:
| Q |
12 |
tcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaa |
111 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030541 |
tcatcatcaatttgataattgaaaggaagaggtaccgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaatttaa |
3030640 |
T |
|
| Q |
112 |
aacatcaagttttgccactaactgaagtaact-------ataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030641 |
aacatcaagttttgccactaactgaagtaactaaaaactataacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttt |
3030740 |
T |
|
| Q |
205 |
tcaaggaaacagataaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatgttaattcagaagctacta |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030741 |
tcaaggaaacagataaaattaacacaaaaacacaaatgattgatcgaaattatattcataagggaattaccagaaacctatgttaattcagaagctacta |
3030840 |
T |
|
| Q |
305 |
tgagctagaaactaatcaaactgacttaaaaataatcatatcactgaaacggcagaaaatttattgaataagttcaacaaagtacctgaaaaagttccaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030841 |
tgagctagaaactaatcaaactgacttaaaaataatcatatcactgaaacggcagaaaatttattgaataagttcaacaaagtacctgaaaaagttccaa |
3030940 |
T |
|
| Q |
405 |
atgccgcgacgaagtatctccaagcaagctacaatagcagtcaaagctgattt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3030941 |
atgccgcgacgaagtatctccaagcaagctacaacagcagtcaaagctgattt |
3030993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 3014838 - 3014944
Alignment:
| Q |
10 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaattt |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
3014838 |
catcatcatcaacttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaactc |
3014937 |
T |
|
| Q |
110 |
aaaacat |
116 |
Q |
| |
|
||||||| |
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|
| T |
3014938 |
aaaacat |
3014944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 2996243 - 2996339
Alignment:
| Q |
10 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaa |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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|
| T |
2996243 |
catcatcatcaacttgataattgaaaggaagaggtactgacttaaatgccctatagtttccaacattgttgaaatgctcattctccaacctgttcaa |
2996339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 3015406 - 3015472
Alignment:
| Q |
387 |
tacctgaaaaagttccaaatgccgcgacgaagtatctccaagcaagctacaatagcagtcaaagctg |
453 |
Q |
| |
|
||||| |||||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |
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|
| T |
3015406 |
tacctaaaaaagttccaaatgccgcggcgaataatctccaagctagctacaagagcagtcatagctg |
3015472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 360 - 453
Target Start/End: Original strand, 2997204 - 2997296
Alignment:
| Q |
360 |
aaaatttattgaataagttcaacaaagtacctgaaaaagttccaaatgccgcgacgaagtatctccaagcaagctacaatagcagtcaaagctg |
453 |
Q |
| |
|
|||| ||| |||||| |||||| ||| ||||| | ||| ||||||||||| || |||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
2997204 |
aaaagttaatgaatatgttcaaaaaa-tacctaagaaaattccaaatgccacggcgaatgatctccaagcaagctacaagagcagtcaaagctg |
2997296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 122 - 455
Target Start/End: Original strand, 11327702 - 11328034
Alignment:
| Q |
122 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
217 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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|
| T |
11327702 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
11327801 |
T |
|
| Q |
218 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatgttaattcagaagctactatgagctagaaact |
317 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
11327802 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctattttaattcagaagctactatgagctagcaact |
11327893 |
T |
|
| Q |
318 |
aat-caaactgacttaaaaataatcatatcactgaaacggcagaaaatttattgaataagttcaacaaa--gtacctgaaaaagttccaaatgccgcgac |
414 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||||| || | ||||||||||||| |||||| ||||| ||||||||||||||||||||||| || | |
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|
| T |
11327894 |
aatccaaactgacataaatgtaatcatatcactgaattggtacaaaatttattgaagaagttccacaaaagttacctgaaaaagttccaaatgccacggc |
11327993 |
T |
|
| Q |
415 |
gaagtatctccaagcaagctacaatagcagtcaaagctgat |
455 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
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| T |
11327994 |
gaagtatctccaagcaagctacaacagcagtcaaagctgat |
11328034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 11327182 - 11327294
Alignment:
| Q |
10 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
11327182 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaagtc |
11327281 |
T |
|
| Q |
110 |
aaaacatcaagtt |
122 |
Q |
| |
|
||||||||||||| |
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|
| T |
11327282 |
aaaacatcaagtt |
11327294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 122 - 455
Target Start/End: Complemental strand, 20063712 - 20063380
Alignment:
| Q |
122 |
tttgccactaactgaagtaacta----taacaaactgtaacagaatactacagcagtatgatactgttagaattcgaattttagttttcaaggaaacaga |
217 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||| |||| || |
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|
| T |
20063712 |
tttgccactaactgatgtaactaaatataacaaactgtaacagaatactacagcagtttgatattgctagaattggaattttagttttcaagaaaactga |
20063613 |
T |
|
| Q |
218 |
taaaattaacacaaaaacacaaatgattgatcgaaaatatattcataagggaattaccagaaacctatgttaattcagaagctactatgagctagaaact |
317 |
Q |
| |
|
||||||||||||||| | ||||||| | |||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
20063612 |
taaaattaacacaaaca--------attgatcaagaatatattcataagcggattaccagaaacctattttaattcagaagctactatgagctagcaact |
20063521 |
T |
|
| Q |
318 |
aatc-aaactgacttaaaaataatcatatcactgaaacggcagaaaatttattgaataagttcaacaaag--tacctgaaaaagttccaaatgccgcgac |
414 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||| || | ||||||||||||| |||||| ||||| ||||||||||||||||||||||| || | |
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|
| T |
20063520 |
aatccaaactgacataaatgtaatcatatcactgaattggtacaaaatttattgaagaagttccacaaaagttacctgaaaaagttccaaatgccacggc |
20063421 |
T |
|
| Q |
415 |
gaagtatctccaagcaagctacaatagcagtcaaagctgat |
455 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20063420 |
gaagtatctccaagcaagctacaacagcagtcaaagctgat |
20063380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 20064232 - 20064120
Alignment:
| Q |
10 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacctgttcaattt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
20064232 |
catcatcatcaatttgataattgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgctcattctccaacctgttcaagtc |
20064133 |
T |
|
| Q |
110 |
aaaacatcaagtt |
122 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20064132 |
aaaacatcaagtt |
20064120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 18545941 - 18545872
Alignment:
| Q |
31 |
tgaaaggaagaggtactgacttgaatgccctatagtttccaacattgttcaaatgttcattctccaacct |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| | |||||||||||||||||||| || |||||||||||||| |
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|
| T |
18545941 |
tgaaaggatgagggactgacttgaatgcacggtagtttccaacattgttcaagtgctcattctccaacct |
18545872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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