View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2920_low_5 (Length: 354)
Name: NF2920_low_5
Description: NF2920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2920_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 338
Target Start/End: Original strand, 36685468 - 36685794
Alignment:
| Q |
12 |
acagaacaagagagtgaaaaaacataaccaacaataagaccgcccttgaacgattcatggaaatcgatgctcttgtcattaaacggatcttccaatgaat |
111 |
Q |
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| T |
36685468 |
acagaacaagagagtgaaaaaacataaccaacaataagaccgcccttgaacgattcatggaaatcgatgctcttgtcattaaacggatcttccaatgaat |
36685567 |
T |
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| Q |
112 |
tcttaatgtattttaaacggtacatatcagtctcagaactctgaactgtcattaacataccgatgcacaagaatactgcgaacaaattatcccttcttat |
211 |
Q |
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| T |
36685568 |
tcttaatgtattttaaacggtacatatcagtctcagaactctgaactgtcattaacataccgatgcacaagaatactgcgaacaaattatcccttcttat |
36685667 |
T |
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| Q |
212 |
ttgaaaagccattcttgtggatatacaaaaactgagactgcatggatatgggaagaaaaagtgagtaaagaagaacaaattggaaaattataaagaggaa |
311 |
Q |
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| T |
36685668 |
ttgaaaagccattcttgtggatatacaaaaactgagactgcatggatatgggaagaaaaagtgagtaaagaagaacaaattggaaaattataaagaggag |
36685767 |
T |
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| Q |
312 |
tgtagaaccttgaatgagaagccgtct |
338 |
Q |
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| T |
36685768 |
tgtagaaccttgaatgagaagccgtct |
36685794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 251
Target Start/End: Original strand, 36677796 - 36677950
Alignment:
| Q |
96 |
ggatcttccaatgaattcttaatgtattttaaacggtacatatcagtctcagaactctgaactgtcattaacataccgatgcacaagaatactgcgaaca |
195 |
Q |
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| T |
36677796 |
ggatcttccaaggaattcttaatggattttaaacagaagatatcagtctcagtactctgactagtcattaacatagtgaggcacaagagtatttgtaata |
36677895 |
T |
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| Q |
196 |
aattatcccttcttatttgaaaagccattcttgtggatatacaaaaactgagactg |
251 |
Q |
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| T |
36677896 |
gaatatccttttttatttgaaaagccattc-cctgcagatacaaaaactgagactg |
36677950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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