View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2921_high_11 (Length: 208)
Name: NF2921_high_11
Description: NF2921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2921_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 4859558 - 4859732
Alignment:
| Q |
14 |
gtagcaaaggggaaagatgaaagaggaacagttgatgaagaaggtaaaggaggttttgacagaagaagagaagatgagaattcctattgcacaaggtctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4859558 |
gtagcaaaggggaaagatgaaagaggaacagttgatgaaaaaggtaaaggaggttttgacagaagaagagaagatgagaattcctattgcacaaggtctt |
4859657 |
T |
|
| Q |
114 |
ccatggactattgatgaacctgaggtaaggtcattttctcatgtaaatccttagcttaaagtgtatatgcttagt |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4859658 |
ccatggactattgatgaacctgaggtaaggtcattttctcatgtaaatctttagcttaaagtgtatatgcttagt |
4859732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 3712391 - 3712441
Alignment:
| Q |
93 |
attcctattgcacaaggtcttccatggactattgatgaacctgaggtaagg |
143 |
Q |
| |
|
|||||| |||||||||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
3712391 |
attcctgttgcacaaggtcttccttggacaacagatgaacctgaggtaagg |
3712441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University